
genewise output
Score 218.90 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000087_2.0    1 MSFCSFFGGEVFQNHFEP                          VYVCA 
                     MSFCSFFGGEVFQNHFEP                          VY CA 
                     MSFCSFFGGEVFQNHFEP          G:G[ggc]        VYACA 
KQ004918.1:subs50000 atttattggggtcactgcGGTTGGTC  Intron 1   CAGGCgtgtg 
                     tctggttggattaaatac <1-----[50055:51749]-1>  tacgc 
                     ggcccccgcgtcgtctgc                          ttgtc 


SPP00000087_2.0   25 KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALK      
                     KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNR  ALK      
                     KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRPGALK      
KQ004918.1:subs51767 atgtgcttactatgcttctcgtagaacggaggaccgcaccggta      
                     aggaattcggcaacacccgcctcactacagtcagcaaagcgcta      
                     gtctggccccggcacacaggactgctccccgcgtggctatacgg      


SPP00000087_2.0   69                        VSCGKCGNGLGHEFLNDGPKPGQSRF 
                                            VSCGKCGNGLGHEFLNDGPKPGQSRF 
                                            VSCGKCGNGLGHEFLNDGPKPGQSRF 
KQ004918.1:subs51899 GTGAGGG  Intron 2   CAGgttgatgagtgcgtcaggcacgctct 
                     <0-----[51899:52249]-0>tcggaggagtgaattaagcacgacgt 
                                            gctcgtccggccgcgctccggggcac 


SPP00000087_2.0   95 XIFSSSLKFVPK                          KETSASQGH   
                     XIFSSSLKFVPK                          KETSASQGH   
                     XIFSSSLKFVPK          G:G[ggc]        KETSASQGH   
KQ004918.1:subs52328 tataatcatgcaGGTGAGCT  Intron 3   CAGGCagatgtcgc   
                     gttggctattca <1-----[52365:53810]-1>  aaccccaga   
                     aacccgggtcta                          aattccggc   


//
Making a G in phase 1 intron
Making a G in phase 1 intron
>KQ004918.1:subseq(793265,100089).pep
MSFCSFFGGEVFQNHFEPGVYACAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPE
HNRPGALKVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGKETSASQGH
//
>KQ004918.1:subseq(793265,100089).[50000:53839].sp
ATGTCGTTCTGCAGCTTCTTCGGGGGCGAGGTTTTCCAGAATCACTTTGAGCCCGGCGTT
TATGCGTGTGCCAAGTGTGGCTATGAGCTGTTCTCCAGCCGCTCGAAGTACGCACACTCA
TCCCCATGGCCGGCATTCACTGAGACCATTCACGCCGACAGCGTGGCCAAGCGTCCGGAG
CACAATCGACCTGGAGCCTTGAAGGTGTCCTGTGGCAAGTGTGGCAACGGGTTGGGCCAC
GAGTTCCTGAACGATGGCCCCAAGCCGGGGCAGTCCCGATTCTGAATATTCAGCAGCTCG
CTGAAGTTTGTCCCTAAAGGCAAAGAAACTTCTGCCTCCCAGGGGCAC
//
KQ004918.1:subseq(793265,100089)	GeneWise	match	50000	53839	218.90	+	.	KQ004918.1:subseq(793265,100089)-genewise-prediction-1
KQ004918.1:subseq(793265,100089)	GeneWise	cds	50000	50054	0.00	+	0	KQ004918.1:subseq(793265,100089)-genewise-prediction-1
KQ004918.1:subseq(793265,100089)	GeneWise	intron	50055	51749	0.00	+	.	KQ004918.1:subseq(793265,100089)-genewise-prediction-1
KQ004918.1:subseq(793265,100089)	GeneWise	cds	51750	51898	0.00	+	2	KQ004918.1:subseq(793265,100089)-genewise-prediction-1
KQ004918.1:subseq(793265,100089)	GeneWise	intron	51899	52249	0.00	+	.	KQ004918.1:subseq(793265,100089)-genewise-prediction-1
KQ004918.1:subseq(793265,100089)	GeneWise	cds	52250	52364	0.00	+	0	KQ004918.1:subseq(793265,100089)-genewise-prediction-1
KQ004918.1:subseq(793265,100089)	GeneWise	intron	52365	53810	0.00	+	.	KQ004918.1:subseq(793265,100089)-genewise-prediction-1
KQ004918.1:subseq(793265,100089)	GeneWise	cds	53811	53839	0.00	+	2	KQ004918.1:subseq(793265,100089)-genewise-prediction-1
//

genewise output
Score 19.49 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000087_2.0   61 HNRSEALKVSCGKCGNGLG                               
                     H  SEA  VSC + G G G                               
                     HTTSEARPVSCSELGGGGG                               
KQ004918.1:sub-14230 caatggccgttagtggggg                               
                     acccacgctcggatggggg                               
                     cctcgtcgggctgggtaga                               


//
>KQ004918.1:subseq(793265,100089).pep
HTTSEARPVSCSELGGGGG
//
>KQ004918.1:subseq(793265,100089).[14230:14172].sp
CACACCACTTCCGAGGCTCGCCCGGTGTCGTGCAGTGAGTTGGGGGGTGGAGGGGGA
//
KQ004918.1:subseq(793265,100089)	GeneWise	match	14230	14174	19.49	-	.	KQ004918.1:subseq(793265,100089)-genewise-prediction-1
KQ004918.1:subseq(793265,100089)	GeneWise	cds	14230	14174	0.00	-	0	KQ004918.1:subseq(793265,100089)-genewise-prediction-1
//
