_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-70
 Query name: gi|226958322|ref|NP_001152962.1| selenoprotein P precursor [Macaca mulatta]
 Query range: 1-381  (total 381)

 Target: /var/www/seblastian_output/947398644/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  53475        53677
 -Exon 2  52224        52436
 -Exon 3  50006        50123
 -Exon 4  46059        46667

 Redox box: YES

Query   MWRSLGLALALCLLPSGGTESQDQSSFCKQPPAWSIRDQDPMLDSNGSVTVVALLQASUYLCILQASK <---Intron---> LEELRVKLEKEGYSNI
        |||||||||||||||||||||||||||||||||||||||||||||/|||||||||||||||||||||| <   1038bp   > ||||||||||||||||
Target  MWRSLGLALALCLLPSGGTESQDQSSFCKQPPAWSIRDQDPMLDSSGSVTVVALLQASUYLCILQASK                LEELRVKLEKEGYSNI
        ataacgcgcgctccctggagacgcatttacccgtaaagcgcacgtagtgagggcccgattctaccgta                tggccgacgaggttaa
        tgggtgtctctgttccggcagaaagctgaacccggtgaaacttacggctcttcttacggatgttacca                taatgtataaagacat
        ggatggtcgtctctagaaagcgcaccctgacacgcaatatagaccttagtgctttaccacgcaggat                agaagaaaggaaatttt
                                                                  *                                         

Query   SYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLNGSKDDFLIYDR <---Intron---> CGLLVYHLGLPFSFLTLPYVEEAIKIVYC
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   2100bp   > |||||||||||||||||||||||||||||
Target  SYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLNGSKDDFLIYDR                CGLLVYHLGLPFSFLTLPYVEEAIKIVYC
        ttaggaccgattctataccaaagtgcacgtccggacaggtactagaaggtcatga                tgccgtccgtctttcatctggggaaagtt
        catttaaagtccgtaacataaatcaatctaaaaaaacatgcttaggaaatttaag                ggtttaatgtctcttctcataactattag
        tttttttaacttaaacattgtgtagtttataaaacaatcgttatacatcccatca                tcttattttgttccatggtaaactgttct
                                                                                                            

Query   EKKCGNCSLTT <---Intron---> LKDEDFCKSVSLATVDETVEAPQPHYHHEHHHNQGHQHLGSSELSENQQPGAPDAPTHPAPPGLHHHHKHKGQ
        ||||||||||| <   3338bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  EKKCGNCSLTT                LKDEDFCKSVSLATVDETVEAPQPHYHHEHHHNQGHQHLGSSELSENQQPGAPDAPTHPAPPGLHHHHKHKGQ
        gaatgattcaa                cagggttaagttgagggagggcccctccgcccacgccccgaagctgacccggcggcaccgccgcccccacagc
        aaaggagctc                ctaaaatgagtctcctaactaccacaaaaaaaaaagaaatgggatcaaaacgccacccaccccgtaaaaaaaga
        agatacctcg                tcatacttatatgttgtaatatagctcttgttctgatgctcctgtagtgaaaaattttttttacttcctgcgta
                                                                                                            

Query   HRQGHPESUDMPGSEGLQHLQKKLURKRCINQLLCKLPKDSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLLAEENITESCQURLPPAAU
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  HRQGHPESUDMPGSEGLQHLQKKLURKRCINQLLCKLPKDSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLLAEENITESCQURLPPAAU
        cacgccgatgacgaggtccccaactcaataactctatcagtgcgcaatttctcccatgaagtgaatctagacctttatcgctgggaaagttctctccggt
        agagacaggatcggagtaataaatggaggtaattgatcaacatccgggggaggatttaacgcctcgagaaatcctgggagttcaaatcacgaggtccccg
        tggtcagcatgaatataataaggcaagatataactagcataggttgcaccttatgataaagtaccagtaaccatatcagatgaggcatattgatgtatca
                *               *                      *                 *           *              *      *

Query   QISQQLVPTEVSTNURUKSKAKKUEUSSN
        |||||||||||||||||||||||||||||
Target  QISQQLVPTEVSTNURUKSKAKKUEUSSN
        caacccgcaggaaatctaaagaatgttta
        atgaattccatgcagggagacaagagcca
        aatggtacaactctacagtgaagaaatac
                      * *      * *   
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 259 ; UGA-SECIS: 268

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 45799 - 45728
 Found by:  Infernal (score=23.22) Covels (score=30.8)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -9.2

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({(((((--....{[[{((((((((({(.....-.........)})))))))))}]]}..--..-)))))})...
 target  UCUAUUUGCU--UUAAUGAGAAUAGAAACGUAAACU-AUGACCUAGGGGUUUCUGUUGGAUAG--UU-AGCAAUUUAG
                         ****           ^^^                       ****                 
