
genewise output
Score 22.81 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000074_2.0  309 VCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYT         
                     +C  S T C   +W+   LF +    N  V  Y+E  ++YT         
                     ICTASGTVCVATDWVKCMLFYI-RKKNQEVHIYMEQTMIYT         
KQ009260.1:subs 9886 atagtgagtggagtgatactta aaaacggcatagcaaata         
                     tgcccgctgtccagtagtttat gaaaaatatataacttac         
                     ttacacaatgtttgcacgtccc gagtgatctcgagagact         


//
>KQ009260.1:subseq(6230464,100074).pep
ICTASGTVCVATDWVKCMLFYIRKKNQEVHIYMEQTMIYT
//
>KQ009260.1:subseq(6230464,100074).[9886:10005].sp
ATTTGTACAGCCTCAGGCACAGTATGTGTGGCTACTGATTGGGTCAAATGCATGCTTTTC
TACATCAGGAAAAAGAATCAGGAAGTTCACATTTACATGGAACAGACAATGATATACACT
//
KQ009260.1:subseq(6230464,100074)	GeneWise	match	9886	10005	22.81	+	.	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	cds	9886	10005	0.00	+	0	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
//

genewise output
Score 829.75 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000074_2.0    1 MAGYEYVSPEQLAGFDKYK                       YSAVDTN 
                     MAGYEYVSPEQLAGFDKYK                       YSAVDTN 
                     MAGYEYVSPEQLAGFDKYK                       YSAVDTN 
KQ009260.1:sub-68525 aggtgtgacgccggtgataGTAATGC  Intron 1   CAGtagggaa 
                     tcgaaatgcaatcgtaaaa<0-----[68468:50072]-0>agctaca 
                     gtccacgcggggtcttgcg                       cttgtct 


SPP00000074_2.0   27 PLSLYVMHPFWNTIVK                       VFPTWLAPNL 
                     PLSLYVMHPFWNTIVK                       VFPTWLAPNL 
                     PLSLYVMHPFWNTIVK                       VFPTWLAPNL 
KQ009260.1:sub-50050 cctctgaccttaaagaGTAAGAT  Intron 2   TAGgtcatcgcac 
                     ctctattactgactta<0-----[50002:49570]-0>ttccgtccat 
                     attgtcgtatgctaag                       atttgggctg 


SPP00000074_2.0   53 ITFSGFLLVVFNFLLMAYFDPDFYAS                        
                     ITFSGFLLVVFNFLLMAYFDPDFYAS                        
                     ITFSGFLLVVFNFLLMAYFDPDFYAS          A:A[gca]      
KQ009260.1:sub-49539 aattgtccggtatccagttgcgttgtGGTAAGAA  Intron 3      
                     tctcgttttttattttcatacatacc <1-----[49460:47249]   
                     atttctggtacttaagactttcctca                        


SPP00000074_2.0   79      PGHKHVPDWVWIVVGILNFVAYTL                     
                          PGHKHVPDWVWIVVGILNFVAYTL                     
                          PGHKHVPDWVWIVVGILNFVAYTL                     
KQ009260.1:sub-47251 CAGCAcgcacgcgtgtagggacatggtac                     
                     -1>  cgaaatcagtgtttgttattcact                     
                          atcgtgtcgtgtagcccccaccta                     


SPP00000074_2.0  104                           GVDGKQARRTNSSTPLGELFDHG 
                                               GVDGKQARRTNSSTPLGELFDHG 
                               D:D[gat]        GVDGKQARRTNSSTPLGELFDHG 
KQ009260.1:sub-47174 GGTAAGGA  Intron 4   CAGATggggacgcaaataactggctgcg 
                      <1-----[47173:41525]-1>  gtagaacggcacgcctgattaag 
                                               tgcagatcacttctcaggttttc 


SPP00000074_2.0  128 LDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYN 
                     LDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYN 
                     LDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYN 
KQ009260.1:sub-41453 cgatttgttggagttatgagtaggagtgctccctggttttactctgata 
                     taggcgtatttctacttgggccgtgttttatttgttttctttcagaaaa 
                     gttgattcttatttcctaaagttcttttttcgagatgttccgccgagtc 


SPP00000074_2.0  177 TGILFLPWGYDISQV                       TISFVYIVTAV 
                     TGILFLPWGYDISQV                       TISFVYIVTAV 
                     TGILFLPWGYDISQV                       TISFVYIVTAV 
KQ009260.1:sub-41306 agactcctgtgaacgGTAAGTA  Intron 5   CAGaattgtagagg 
                     cgttttcggaatgat<0-----[41261:39648]-0>ctcttattcct 
                     agttcgagatctcgg                       ttttccagtgt 


SPP00000074_2.0  203 VGVEAWYEPFLFNFLYRDLFTAMII                         
                     VGVEAWYEPFLFNFLYRDLFT+MII                         
                     VGVEAWYEPFLFNFLYRDLFTSMII          G:G[ggt]       
KQ009260.1:sub-39614 gggggttgctctatttagctataaaGGTAAGAA  Intron 6       
                     tgtacgaactttattagattccttt <1-----[39538:30953]    
                     gatgcgtatcgttcatacactagtt                         


SPP00000074_2.0  228      CALCVTLPMSLLNFF                          SYK 
                          CALCVTLPMSLLNFF                          SYK 
                          CALCVTLPMSLLNFF           R:R[aga]       SYK 
KQ009260.1:sub-30955 TAGGTtgttgaccaatcattAGGTAAGTA  Intron 7   CAGAata 
                     -1>  gctgtctctgttatt  <2-----[30903:29272]-2> gaa 
                          tggtgttagtaactc                          cta 


SPP00000074_2.0  248 NNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMV 
                     NNTLK NSVYEA+VPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMV 
                     NNTLKHNSVYEAVVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMV 
KQ009260.1:sub-29261 aaatacatgtggggctttcttctattagtacttctgatgcccagtttag 
                     aactaaactaacttcttccgtttttcccgttgcccattatacgttattt 
                     tccgactactatgtcattacggctgtaggctgatattagattaacctgt 


SPP00000074_2.0  297 GTAFANST                       CQLIVCQMSSTRCPTLNW 
                     GTAFANST                       CQLIVCQMSSTRCPTLNW 
                     GTAFANST                       CQLIVCQMSSTRCPTLNW 
KQ009260.1:sub-29114 gagtgaaaGTAAGTT  Intron 8   CAGtccagtcaaaactcatat 
                     gcctcagc<0-----[29090:27881]-0>gatttgatggcggcctag 
                     aactccca                       tggttcagttcgtatgtg 


SPP00000074_2.0  323 LLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV       
                     LLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV       
                     LLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV       
KQ009260.1:sub-27826 tcgccttggtggacgggttggaacctataagtacgcactggcg       
                     tttcttttttttatgtccatagtttactccctctcataagtgt       
                     ggttccgtcagacaaactctgctcgtaaagtttgcccttaaag       


SPP00000074_2.0  366                        VKQLSSHFQIYPFSLRKPNSDXLGME 
                                            VKQLSSHFQIYPFSLRKPNSDXLGME 
                                            VKQLSSHFQIYPFSLRKPNSDXLGME 
KQ009260.1:sub-27697 GTGAGTA  Intron 9   CAGgaccaactcatctttaacatgtcgag 
                     <0-----[27697:25220]-0>taatggatatactctgacacagtgta 
                                            agggccttgtcccaggaacataaaga 


SPP00000074_2.0  392 EKNIGL                                            
                     EKNIGL                                            
                     EKNIGL                                            
KQ009260.1:sub-25141 gaaagc                                            
                     aaatgt                                            
                     agttcg                                            


//
Making a A in phase 1 intron
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
>KQ009260.1:subseq(6230464,100074).pep
MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLL
VVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPL
GELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGIL
FLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTSMIIGCALCVTLPMSLL
NFFRSYKNNTLKHNSVYEAVVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAF
ANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIH
YGVRVVKQLSSHFQIYPFSLRKPNSDXLGMEEKNIGL
//
>KQ009260.1:subseq(6230464,100074).[68525:25122].sp
ATGGCTGGCTACGAATACGTGAGCCCGGAGCAGCTGGCTGGCTTTGATAAGTACAAGTAC
AGTGCTGTGGATACCAATCCACTTTCTCTGTATGTCATGCATCCATTTTGGAACACTATA
GTAAAGGTATTTCCTACTTGGCTGGCGCCCAATCTGATAACTTTTTCTGGCTTTCTGCTG
GTTGTATTCAATTTTCTACTAATGGCATACTTTGATCCTGACTTCTATGCCTCAGCACCA
GGTCACAAGCATGTGCCTGACTGGGTTTGGATTGTAGTGGGCATCCTCAACTTCGTAGCC
TACACTCTAGATGGTGTGGACGGAAAGCAAGCTCGCAGAACCAATTCTAGCACTCCCTTA
GGGGAGCTTTTTGATCATGGCCTGGATAGTTGGTCATGTGTTTACTTTGTTGTAACTGTT
TATTCCATCTTTGGAAGAGGATCGACTGGTGTCAGTGTTTTTGTTCTTTATCTCCTGCTA
TGGGTAGTTTTGTTTTCTTTCATCCTGTCCCACTGGGAAAAGTATAACACAGGGATTCTT
TTCCTGCCATGGGGATATGACATTAGCCAGGTGACTATTTCTTTTGTCTACATAGTGACT
GCGGTTGTGGGAGTTGAGGCCTGGTATGAACCTTTCCTGTTTAATTTCTTATATAGAGAC
CTATTCACTTCAATGATTATTGGTTGTGCGTTGTGTGTGACTCTTCCAATGAGTTTACTA
AACTTTTTCAGAAGCTATAAAAATAACACCTTGAAACACAATTCAGTCTATGAAGCTGTG
GTTCCCTTATTTTCTCCATGCTTGCTGTTCATTTTGTCTACAGCGTGGATCCTTTGGTCA
CCTTCAGATATTTTAGAGCTACATCCTAGAGTATTCTACTTTATGGTTGGAACAGCCTTT
GCCAACAGCACATGTCAGCTGATTGTTTGCCAAATGAGTAGTACCCGGTGTCCAACTTTG
AATTGGTTGCTGGTTCCTCTCTTCTTGGTTGTCTTAGTGGTAAACCTAGGAGTAGCCTCT
TACGTTGAGAGCATTCTCCTGTATACATTAACAACGGCTTTTACTCTGGCCCACATCCAT
TATGGAGTACGAGTGGTAAAGCAGCTGAGCAGCCATTTTCAGATTTACCCCTTCTCATTG
AGGAAACCAAACTCAGATTGACTAGGAATGGAAGAAAAGAATATTGGCCTG
//
KQ009260.1:subseq(6230464,100074)	GeneWise	match	68525	25124	829.75	-	.	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	cds	68525	68469	0.00	-	0	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	intron	68468	50072	0.00	-	.	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	cds	50071	50003	0.00	-	0	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	intron	50002	49570	0.00	-	.	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	cds	49569	49461	0.00	-	0	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	intron	49460	47249	0.00	-	.	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	cds	47248	47174	0.00	-	2	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	intron	47173	41525	0.00	-	.	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	cds	41524	41262	0.00	-	2	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	intron	41261	39648	0.00	-	.	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	cds	39647	39539	0.00	-	0	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	intron	39538	30953	0.00	-	.	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	cds	30952	30904	0.00	-	2	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	intron	30903	29272	0.00	-	.	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	cds	29271	29091	0.00	-	1	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	intron	29090	27881	0.00	-	.	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	cds	27880	27698	0.00	-	0	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	intron	27697	25220	0.00	-	.	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
KQ009260.1:subseq(6230464,100074)	GeneWise	cds	25219	25124	0.00	-	0	KQ009260.1:subseq(6230464,100074)-genewise-prediction-1
//
