
genewise output
Score 228.51 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000070_2.0    1 MAPRGRKRKAEAAVVAVAEKREKLANGGEGMEEATVVIEH          
                     MAPRGRKRKAEAA+VA AEK+EKLAN GEGMEEATVVIEH          
                     MAPRGRKRKAEAAMVAAAEKQEKLANSGEGMEEATVVIEH          
KQ005813.1:subs49483 agccgaacaggggagggggacgacgaagggagggaggagc          
                     tccgggagacaccttcccaaaaatcaggagtaacctttaa          
                     gtcctggggtgcggccacggaggggccggagggacttcgt          


SPP00000070_2.0   41                           TSXRVYGRNAAALSQALRLEAPE 
                                               TSXRVYGRNAAALSQALRLEAPE 
                                C:C[tgc]       TSXRVYGRNAAALSQALRLEAPE 
KQ005813.1:subs49603 TGGTGAGGG  Intron 1   TAGCaatcgtgcagggcacgcccggcg 
                       <2-----[49605:49693]-2> cgggtaggaccctgactgtacca 
                                               gcacctgcccgcgtgggcggcag 


SPP00000070_2.0   65 LPVKVNPTKPRRGSFEVTLLRPDGS                         
                     LPVKVNPTKPRRGSFEVTLLRPDGS                         
                     LPVKVNPTKPRRGSFEVTLLRPDGS          S:S[agt]       
KQ005813.1:subs49764 ccgagacaaccagatggaccccggaAGTAAGTG  Intron 2       
                     tctataccacggggtatcttgcagg <1-----[49840:50003]    
                     taaggcgcgcggcccgggggcgccc                         


SPP00000070_2.0   90      AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
KQ005813.1:subs50001 CAGGTggctagaaagcccacatcgccgggggtaatct             
                     -1>  catgcgtaagccgatatcacaattaataaatc             
                          ggcgtgtgggcacacactgtagggaggggcgg             


//
Making a C in phase 2 intron
Making a S in phase 1 intron
>KQ005813.1:subseq(812415,100101).pep
MAPRGRKRKAEAAMVAAAEKQEKLANSGEGMEEATVVIEHCTSXRVYGRNAAALSQALRL
EAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKY
LS
//
>KQ005813.1:subseq(812415,100101).[49483:50101].sp
ATGGCTCCCCGCGGTAGGAAGCGGAAGGCTGAGGCCGCGATGGTCGCCGCAGCCGAGAAG
CAAGAGAAGCTGGCGAACAGCGGGGAGGGAATGGAGGAGGCAACCGTTGTTATCGAGCAT
TGCACGAGCTGACGCGTCTATGGGCGCAACGCCGCGGCCCTGAGTCAGGCGCTGCGCCTG
GAGGCCCCAGAGCTTCCAGTAAAGGTGAACCCGACCAAGCCCCGGAGGGGCAGCTTCGAG
GTGACGCTGCTGCGCCCGGACGGCAGCAGTGCGGAGCTCTGGACTGGGATTAAGAAGGGG
CCCCCACGCAAACTCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAGAAGTAC
CTGTCG
//
KQ005813.1:subseq(812415,100101)	GeneWise	match	49483	50101	228.51	+	.	KQ005813.1:subseq(812415,100101)-genewise-prediction-1
KQ005813.1:subseq(812415,100101)	GeneWise	cds	49483	49604	0.00	+	0	KQ005813.1:subseq(812415,100101)-genewise-prediction-1
KQ005813.1:subseq(812415,100101)	GeneWise	intron	49605	49693	0.00	+	.	KQ005813.1:subseq(812415,100101)-genewise-prediction-1
KQ005813.1:subseq(812415,100101)	GeneWise	cds	49694	49839	0.00	+	1	KQ005813.1:subseq(812415,100101)-genewise-prediction-1
KQ005813.1:subseq(812415,100101)	GeneWise	intron	49840	50003	0.00	+	.	KQ005813.1:subseq(812415,100101)-genewise-prediction-1
KQ005813.1:subseq(812415,100101)	GeneWise	cds	50004	50101	0.00	+	2	KQ005813.1:subseq(812415,100101)-genewise-prediction-1
//

genewise output
Score 17.75 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000070_2.0   77 GSFEVTLLRPDGSS                          -AELWTGIK 
                     GS+EV  LRP   +                              W G+  
                     GSLEVRSLRPAWPT           -:R[cgg]       VSSCWPGLS 
KQ005813.1:sub-62935 gtcggaatacgtcaCGGTGAGAC  Intron 1   CAGGgttttcgtt 
                     gctatggtgccgcc  <2-----[62891:62277]-2> tccggcgtc 
                     aatgcgtgaacgaa                          taatgacgt 


SPP00000070_2.0   99 KGPPRKLKFPEPQEVV                                  
                     + P   + +P+P +V+                                  
                     QTPDLVIHLPQPPKVL                                  
KQ005813.1:sub-62248 cacgcgaccccccagt                                  
                     accatttatcaccatt                                  
                     actccgccgtgtcagg                                  


//
Making a R in phase 2 intron
>KQ005813.1:subseq(812415,100101).pep
GSLEVRSLRPAWPTRVSSCWPGLSQTPDLVIHLPQPPKVL
//
>KQ005813.1:subseq(812415,100101).[62935:62199].sp
GGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACACGGGTTTCATCATGTTGG
CCAGGCTTGTCTCAAACCCCTGACCTCGTGATCCACCTGCCTCAGCCTCCCAAAGTGTTG
//
KQ005813.1:subseq(812415,100101)	GeneWise	match	62935	62201	17.75	-	.	KQ005813.1:subseq(812415,100101)-genewise-prediction-1
KQ005813.1:subseq(812415,100101)	GeneWise	cds	62935	62892	0.00	-	0	KQ005813.1:subseq(812415,100101)-genewise-prediction-1
KQ005813.1:subseq(812415,100101)	GeneWise	intron	62891	62277	0.00	-	.	KQ005813.1:subseq(812415,100101)-genewise-prediction-1
KQ005813.1:subseq(812415,100101)	GeneWise	cds	62276	62201	0.00	-	1	KQ005813.1:subseq(812415,100101)-genewise-prediction-1
//
