
genewise output
Score 337.05 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000040_2.0    8 AAWLLLWAAACAQQEQDFYDFKAVNIRGKLVSLEKYRG            
                     AAW  + AAACAQ+ + +   ++ +  GKLVSLEKYR             
                     AAWRPM-AAACAQRSRTLRLKRSTS--GKLVSLEKYRL            
KQ005701.1:subs43827 ggtcca gggtgccaaacccactat  gacgtcgatcc            
                     ccggct cccgcagggctgtagccc  gattctaaagt            
                     gggctg tgccgggcgtaacggaac  caggggggcgc            


SPP00000040_2.0   46                           VSLVVNVASECGFTDQHYRALQQ 
                                                SLVVNVASECGFTDQHYRALQQ 
                               S:G[ggt]        !SLVVNVASECGFTDQHYRALQQ 
KQ005701.1:subs43932 GGTGAGTG  Intron 1   CAGGT1tcggaggagtgtagcctcgccc 
                      <1-----[43933:48097]-1>   ctttatcgaggtcaaaagctaa 
                                                cgggtgccgcccacgccacggg 


SPP00000040_2.0   70 LQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKI 
                     LQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKI 
                     LQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKI 
KQ005701.1:subs48167 cccgcgccctagcgtctactgccgcgaaagagatgccatagttcataaa 
                     tagatgcaatattctcgaatgaaacagaaatagtcggcagtctcttgat 
                     gggcgtcccccaccccccgtcaggtcccggtgctccccctcaccgtcgt 


SPP00000040_2.0  119 AVTGTGAHPAFKYLA                          TSGKEPTW 
                     AVTGTGAHPAFKYLA                          TSGKEPTW 
                     AVTGTGAHPAFKYLA          Q:Q[cag]        TSGKEPTW 
KQ005701.1:subs48314 ggagaggccgtatcgCGTAAGTC  Intron 2   TAGAGatgagcat 
                     ctcgcgcacctaatc <1-----[48360:50000]-1>  ccgaaccg 
                     acctttcttccgcgc                          ttgggccg 


SPP00000040_2.0  143 NFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL     
                     NFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLIL KREDL     
                     NFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILRKREDL     
KQ005701.1:subs50027 attatcggcggaggggtgcagtggggaccaagcgaacaccacggt     
                     atgaattccagattgcgacctctaatgcatccttgatttgagaat     
                     ccggctacataggagtgcatgagggcacgcagcgggccaggaaca     


//
Making a G in phase 1 intron
Making a Q in phase 1 intron
>KQ005701.1:subseq(32821015,100158).pep
AAWRPMAAACAQRSRTLRLKRSTSGKLVSLEKYRLGXSLVVNVASECGFTDQHYRALQQL
QRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFK
YLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILRKREDL
//
>KQ005701.1:subseq(32821015,100158).[43827:48099].sp
GCGGCGTGGCGCCCTATGGCTGCGGCCTGCGCGCAGCGGAGCAGGACTCTACGACTCAAG
CGGTCAACATCCGGCAAACTGGTGTCGCTGGAGAAGTACCGGCTCGGT
>KQ005701.1:subseq(32821015,100158).[48101:50161].sp
TCCCTGGTGGTGAATGTGGCCAGCGAGTGCGGCTTCACAGACCAGCACTACCGAGCCCTG
CAGCAGCTGCAGCGGGACCTGGGTCCCCACCACTTCAACGTACTCGCCTTCCCCTGCAAC
CAGTTTGGCCAACAGGAGCCTGACAGCAACAAGGAGATTGAGAGCTTTGCCCGCCGCACC
TACAGTGTCTCATTCCCCATGTTTAGCAAGATTGCAGTCACCGGTACTGGTGCCCATCCT
GCCTTCAAGTACCTGGCCCAGACTTCTGGGAAGGAGCCCACCTGGAACTTCTGGAAGTAC
CTTGTAGCCCCAGATGGAAAGGTGGTAGGGGCTTGGGACCCAACTGTGTCAGTGGAGGAG
GTCAGACCCCAGATCACAGCGCTCGTGAGGAAGCTCATCCTACGGAAGCGAGAAGACTTA
//
KQ005701.1:subseq(32821015,100158)	GeneWise	match	43827	48099	5.02	+	.	KQ005701.1:subseq(32821015,100158)-genewise-prediction-1
KQ005701.1:subseq(32821015,100158)	GeneWise	cds	43827	43932	0.00	+	0	KQ005701.1:subseq(32821015,100158)-genewise-prediction-1
KQ005701.1:subseq(32821015,100158)	GeneWise	intron	43933	48097	0.00	+	.	KQ005701.1:subseq(32821015,100158)-genewise-prediction-1
KQ005701.1:subseq(32821015,100158)	GeneWise	cds	48098	48099	0.00	+	2	KQ005701.1:subseq(32821015,100158)-genewise-prediction-1
KQ005701.1:subseq(32821015,100158)	GeneWise	match	48101	50161	333.03	+	.	KQ005701.1:subseq(32821015,100158)-genewise-prediction-2
KQ005701.1:subseq(32821015,100158)	GeneWise	cds	48101	48359	0.00	+	0	KQ005701.1:subseq(32821015,100158)-genewise-prediction-2
KQ005701.1:subseq(32821015,100158)	GeneWise	intron	48360	50000	0.00	+	.	KQ005701.1:subseq(32821015,100158)-genewise-prediction-2
KQ005701.1:subseq(32821015,100158)	GeneWise	cds	50001	50161	0.00	+	2	KQ005701.1:subseq(32821015,100158)-genewise-prediction-2
//

genewise output
Score 19.74 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000040_2.0  108 YSVSFPMFSKIAV                                     
                     +S+ FPMFS+++V                                     
                     FSLCFPMFSRFSV                                     
KQ005701.1:subs-4534 tttttcattattg                                     
                     tctgtcttcgtct                                     
                     ttatttgtcatta                                     


//
>KQ005701.1:subseq(32821015,100158).pep
FSLCFPMFSRFSV
//
>KQ005701.1:subseq(32821015,100158).[4534:4494].sp
TTTTCTTTATGTTTTCCTATGTTTTCCAGATTTTCTGTA
//
KQ005701.1:subseq(32821015,100158)	GeneWise	match	4534	4496	19.74	-	.	KQ005701.1:subseq(32821015,100158)-genewise-prediction-1
KQ005701.1:subseq(32821015,100158)	GeneWise	cds	4534	4496	0.00	-	0	KQ005701.1:subseq(32821015,100158)-genewise-prediction-1
//
