
genewise output
Score 19.68 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000026_2.0   86 LHARYAECGLRILAFPCNQFGKQEPG                        
                     LH R  +C  R    P +Q G   PG                        
                     LHPRQGQCARRPPTAPTHQHGLPSPG                        
KQ004606.1:subs24871 cccccgctgccccagcacccgccacg                        
                     tacgagagcggccccccaaagtcgcg                        
                     ccaaatgccgccgacgccgtccccaa                        


//
>KQ004606.1:subseq(20989956,100170).pep
LHPRQGQCARRPPTAPTHQHGLPSPG
//
>KQ004606.1:subseq(20989956,100170).[24871:24948].sp
CTCCACCCACGACAAGGTCAGTGCGCCCGGCGCCCCCCGACAGCCCCGACCCACCAGCAT
GGCCTCCCCAGCCCAGGA
//
KQ004606.1:subseq(20989956,100170)	GeneWise	match	24871	24948	19.68	+	.	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	cds	24871	24948	0.00	+	0	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
//

genewise output
Score 369.73 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000026_2.0    1 MSLGRLCRLLKPALLCGALAAPGLAGTM                      
                     M+LGRLCRLLKPALLCGALAAPGLAGTM                      
                     MNLGRLCRLLKPALLCGALAAPGLAGTM                      
KQ004606.1:sub-52620 aacgcctcccacgcctggcggcgcggaaGTGAGCG  Intron 1     
                     tatggtggttaccttggctcccgtcgct<0-----[52536:51399]  
                     gcccctccggggtgctgtgcgcccctcg                      


SPP00000026_2.0   29    CASRDDWRCARSMHEFSAKDIDGHMVNLDKY                
                        CASRDDWRCARSMHEFSAKDIDGHMVNLDKY                
                        CASRDDWRCARSMHEFSAKDIDGHMVNLDKY                
KQ004606.1:sub-51401 CAGtgtcggtctgctacgttgagaggcagacgat                
                     -0>gccgaagggcgctaatccaatagattataaa                
                        cgcgccgctgccgcgtcgacccgcgtcgcgc                


SPP00000026_2.0   60                           GFVCIVTNVASQXGKTEVNYTQL 
                                               GFVCIVTNVASQXGKTEVNYTQL 
                                R:R[cgg]       GFVCIVTNVASQXGKTEVNYTQL 
KQ004606.1:sub-51305 CGGTGGGCG  Intron 2   CAGGgtgtagaaggtctgaaggatacc 
                       <2-----[51303:51217]-2> gttgttcatccaggacataacat 
                                               gcgcccccgccgacgcagcctgc 


SPP00000026_2.0   84 VDLHARYAECGLRILAFPCNQFGKQ                       E 
                     VDLHARYAECGLRILAFPCNQFGKQ                       E 
                     VDLHARYAECGLRILAFPCNQFGKQ                       E 
KQ004606.1:sub-51146 ggccgctggtgtcacgtctactgacGTGGGCG  Intron 3   CAGg 
                     tatacgacaggtgttctcgaatgaa<0-----[51071:50907]-0>a 
                     ccgccactgctggcgccatcgcggg                       g 


SPP00000026_2.0  110 PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
                     PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
                     PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
KQ004606.1:sub-50903 cgaaggaagtgggtagatgataaatgaggggccctataaaccagagacg 
                     cggaaataatccgaatatattgatgtagaacactgagtatacagagttg 
                     agtcaacagccgccccactgccgacgcgccccgggggggcgcgcgccga 


SPP00000026_2.0  159                           AIKWNFTK                
                                               AIKWNFTK                
                                N:N[aat]       AIKWNFTK                
KQ004606.1:sub-50756 AAGTGCGTG  Intron 4   CAGTgaatataa                
                       <2-----[50754:50338]-2> ctagatca                
                                               ccggcccg                


SPP00000026_2.0  168                        FLIDKNGCVVKRYGPMEEPL       
                                            FLIDKNGCVVKRYGPMEEPL       
                                            FLIDKNGCVVKRYGPMEEPL       
KQ004606.1:sub-50312 GTAAGGG  Intron 5   CAGtcagaagtggactgcaggcc       
                     <0-----[50312:50168]-0>tttaaaggttagagctaact       
                                            cctcgcccggggcacggacg       


SPP00000026_2.0  188                        VIEKDLPHYF                 
                                            VIEKDLPHYF                 
                                            VIEKDLPHYF                 
KQ004606.1:sub-50107 GTAGGTC  Intron 6   CAGgagagccctt                 
                     <0-----[50107:50030]-0>ttaaatcaat                 
                                            gaggcgcctc                 


//
Making a R in phase 2 intron
Making a N in phase 2 intron
>KQ004606.1:subseq(20989956,100170).pep
MNLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYR
GFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA
AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY
GPMEEPLVIEKDLPHYF
//
>KQ004606.1:subseq(20989956,100170).[52620:49998].sp
ATGAACCTCGGCCGCCTTTGCCGCCTGCTGAAGCCGGCTCTGCTCTGTGGGGCTCTGGCC
GCGCCCGGCCTCGCCGGTACCATGTGCGCGTCCCGGGACGACTGGCGCTGTGCGCGCTCC
ATGCACGAGTTTTCCGCGAAAGACATCGACGGGCACATGGTTAACCTGGACAAGTACCGG
GGGTTCGTGTGCATCGTCACCAACGTGGCCTCCCAGTGAGGCAAGACCGAAGTGAACTAC
ACTCAGCTCGTCGACCTGCACGCCCGATACGCTGAGTGCGGTTTGCGGATCCTGGCCTTC
CCATGTAACCAGTTCGGGAAGCAGGAGCCAGGGAGTAACGAAGAAATCAAAGAGTTCGCC
GCGGGCTACAACGTCAAATTCGATATGTTCAGCAAGATATGCGTGAACGGGGACGACGCC
CACCCGCTGTGGAAGTGGATGAAGATCCAGCCCAAGGGCAAGGGCATCCTGGGAAATGCC
ATCAAGTGGAACTTCACCAAGTTCCTCATTGACAAGAACGGCTGCGTGGTGAAGCGGTAC
GGACCCATGGAGGAACCCCTGGTGATAGAGAAGGACCTGCCCCACTATTTC
//
KQ004606.1:subseq(20989956,100170)	GeneWise	match	52620	50000	369.73	-	.	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	cds	52620	52537	0.00	-	0	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	intron	52536	51399	0.00	-	.	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	cds	51398	51304	0.00	-	0	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	intron	51303	51217	0.00	-	.	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	cds	51216	51072	0.00	-	1	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	intron	51071	50907	0.00	-	.	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	cds	50906	50755	0.00	-	0	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	intron	50754	50338	0.00	-	.	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	cds	50337	50313	0.00	-	1	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	intron	50312	50168	0.00	-	.	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	cds	50167	50108	0.00	-	0	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	intron	50107	50030	0.00	-	.	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
KQ004606.1:subseq(20989956,100170)	GeneWise	cds	50029	50000	0.00	-	0	KQ004606.1:subseq(20989956,100170)-genewise-prediction-1
//
