_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-53
 Query name: gi|946682873|ref|XP_006193513.2| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial, partial [Camelus ferus]
 Query range: 49-218  (total 219)

 Target: /var/www/seblastian_output/655487131/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  51304        51404
 -Exon 2  51072        51216
 -Exon 3  50755        50906
 -Exon 4  50313        50337
 -Exon 5  50108        50167
 -Exon 6  50003        50029

 Redox box: no

Query   LQCASRDDWRCAHSMHEFSAKDIDGHMVNLDKYR <---Intron---> GYVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQE 
        |||||||||||| ||||||||||||||||||||| <    87bp    > |/||||||||||||||/|||||||||||||||||||||||||||||/|| 
Target  LQCASRDDWRCARSMHEFSAKDIDGHMVNLDKYR                GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQE 
        tctgtcggtctgctacgttgagaggcagacgatc                gtgtagaaggtctgaaggataccggccgctggtgtcacgtctactgacg 
        tagccgaagggcgctaatccaatagattataaag                gttgttcatccaggacataacattatacgacaggtgttctcgaatgaa  
        ggcgcgccgctgccgcgtcgacccgcgtcgcgc                ggcgcccccgccgacgcagcctgcccgccactgctggcgccatcgcggg  
                                                                      *                                     

Query   <---Intron---> PGSNAEIKEFAAGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGKGILGNA <---Intron---> IKWNFTKFL <---Intr
        <   165bp    > |||| ||||||||||||||/|||||||||||||||||||/||||||||||| <   417bp    > ||||||||| <   145b
Target                 PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNA                IKWNFTKFL         
                       cgaaggaagtgggtagatgataaatgaggggccctataaaccagagacgag                aatataatc         
                      acggaaataatccgaatatattgatgtagaacactgagtatacagagttgac                tagatcat          
                      gagtcaacagccgccccactgccgacgcgccccgggggggcgcgcgccgat                ccggcccgc          
                                                                                                            

Query   on---> IDKNGCVVKRYGPMEEPLVI <---Intron---> EKDLPCY
        p    > |||||||||||||||||||| <    78bp    > ||||| |
Target         IDKNGCVVKRYGPMEEPLVI                EKDLPHY
               agaagtggactgcaggccga                gagccct
              ttaaaggttagagctaacttt                aaatcaa
              ctcgcccggggcacggacgga                ggcgcct
                                                          
 Sequence until next stop: 
TTCTAG
 F  * 

 Distance CDS-SECIS: 50 ; UGA-SECIS: 419

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49952 - 49873
 Found by:  Infernal (score=26.11) Covels (score=33.09)
 Stem2 length = 8   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -9.0

         ..(((((((.............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..([(({((.............([[{(({((((((.......-...........))))))}))}]])..--..-.))}))])..
 target  CGGAGCCUUCCACCGGCACCCAUGACGGCCUGCUUGCAAACC-AGCUCCUGGUGAGGCAGACCCGAAAA--UC-CAGCGUGCAC
                               ****           ^^^                       ****                 
