_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-66
 Query name: gi|169636445|ref|NP_001108609.1| glutathione peroxidase 2 [Macaca mulatta]
 Query range: 1-190  (total 190)

 Target: /var/www/seblastian_output/317747809/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  50000        50221
 -Exon 2  46999        47346

 Redox box: no

Query   MAFIAKSFYGVSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        ||||||||| /||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   2653bp   > ||||||||||
Target  MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ                ENCQNEEILN
        agtagatttgcagaacgggaggtaatcgaggcagaggtctgaaacgtaccagcctctcaccggcgtctactgcc                gatcaggaca
        tcttcactaatgctgtagaatatactgggctttaatcctggcccgatcataataggtcggttttgtcgaatgaa                aagaaaatta
        gtctcgcctcctcccgtgggatctgcgcgcggtatgtacacactgcccgccggacctcgcggctcctccatatg                gctgtggcgc
                                               *                                                            

Query   SLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        acatgccgggtccatacgcatggagcagccgtgtcagacctccggcttcaagcacaatacgcctgggtatgatcagcgggctcctacatcaaaagcgaac
        gtaatgcgggaacctcttaagatagaaaacttcataaatcacaaactcttcacatttggctggcatcgataatttgcagactggaggctcctatacatag
        tcgtcttgtacgttcctcaatggtggtgttccccggcgccctttcatccgctcgcctgccgctatgcgctggccagggagccaccccccaccctgtccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ctatca
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 218 ; UGA-SECIS: 668

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 46780 - 46716
 Found by:  Infernal (score=35.57) Covels (score=29.54)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -21.9

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....([[{(((((({(((......-..-----...)))}))))))}]])----....)))))))..
 target  GGCCUUCAC---AGAAUGAUGGCACCUUCCUAAACC-CU-----CAUGGGUGGUGUCUGAG----AGGCGUGAAGGGC
                         ****           ^^^                       ****                 
