_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-66
 Query name: gi|226531023|ref|NP_001152770.1| glutathione peroxidase 1 [Macaca mulatta]
 Query range: 1-198  (total 198)

 Target: /var/www/seblastian_output/640457912/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  50000        50236
 -Exon 2  49393        49749

 Redox box: no

Query   MCAARLAAAAVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ <---Intron---> ENAKN
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   250bp    > |||||
Target  MCAARLAAAAVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ                ENAKN
        atggccgggggtgttgcccggggcgacgtcagagccagaggtctgaagcgtacaagcccccgccgcggcgtctactgcc                gagaa
        tgccgtcccctactccgctcggactgtgctggattttaatcctggcctgaacataataggtgcggttttgtcgaatgaa                aacaa
        gtttgaggaggcccggcggccggtgcgccagcggatcgtggccaccgcgcccggcggggctgcgcgggcccgccgtgtg                gccgc
                                                   *                                                        

Query   EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIE
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIE
        ggacatcatgccgggtgcatactgatggaggggccctgtccggccgcagggagcaagcacaattcgtcagggtatgatcggcgggcgcatacctcaagag
        aattactaatgcgggtacattttaagatagcgcacttcttgactcccgaacccttcacattcgcctggaatcgataatttgcagtctggagggtactata
        agtgtccgccatttgcgcccgccggcggctaggctccccgggcgacccctctgcgcccgcccgtggcccttcgccggcggctctgcacgcccccgctccg
                                                                                                            

Query   PDIEALLSQGPSSA
        ||||||||||||||
Target  PDIEALLSQGPSSA
        cgaggcctcgcaag
        catacttcagcggc
        tccacggtatcctc
                      
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 53 ; UGA-SECIS: 515

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49339 - 49272
 Found by:  Infernal (score=34.1) Covels (score=26.45)
 Stem2 length = 11   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -15.6

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((.---....{[[(((((((.(((((........-----..))))))))))))]]}..--..-..))))))..
 target  GGGUUUUCA---UCUAUGAGGGUGUUUCCUCUAAACCUAC-----AAGGAGGAACACCUGAUAA--UA-CAGAAAAUAC
                         ****            ^^^                       ****                 
