
genewise output
Score 540.11 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000002_2.0    1 MGLPQPGLWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
                     MGLPQ GLW+K+LWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
                     MGLPQSGLWVKKLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
KQ005701.1:subs29816 agccctgctgaactgctggggcggggagccattcgagacaacgaggaag 
                     tgtcacgtgtaatgtttatctatttgattttttcagtagattctgaacg 
                     gggcgaggggggcggcgggtctgcgtagtgagtacacggccgcgcggct 


SPP00000002_2.0   50 MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
                     MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
                     MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
KQ005701.1:subs29963 aaaacctacgatacattaacttttgtagctcccggaagcggcgcatcgg 
                     tcgacatgaaagtccttgcaatgtttatggagtaaccatggtccagctt 
                     gcgcttcccccgcgctccggtcgccggctggaagcgtgagtgcaccagc 


SPP00000002_2.0   99 RLSGQRCNIWEFMQ                          NRPLVLNFG 
                     RLSGQRCNIW+FMQ                          NRPLVLNFG 
                     RLSGQRCNIWDFMQ          G:G[ggc]        NRPLVLNFG 
KQ005701.1:subs30110 cctgcataatgtacGGTCAGGA  Intron 1   CAGGCaaccgcatg 
                     gtcgaggatgatta <1-----[30153:40453]-1>  agctttatg 
                     ccaaggcctgctga                          tgagggtta 


SPP00000002_2.0  123 SCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS            
                     SCTXPSFMFKFDQFKRLIEDFSSIADFL+IYIEEAHAS            
                     SCTXPSFMFKFDQFKRLIEDFSSIADFLIIYIEEAHAS            
KQ005701.1:subs40483 atatcttatatgctaacaggtataggtcaatagggcgt            
                     ggcgcctttataatagttaatgctcattttataacacc            
                     ttcatatgcaccacggttacttcaattcctctaaataa            


SPP00000002_2.0  161                           GWAFKNNMDIRNHQNLQDRLQAA 
                                               GWAFKNNMDIRNH+NLQDRLQAA 
                               D:D[gat]        GWAFKNNMDIRNHRNLQDRLQAA 
KQ005701.1:subs40597 GGTACAGA  Intron 2   TAGATgtgtaaaagaaaccaccgcccgg 
                      <1-----[40598:46182]-1>  ggctaaatatgaagataagtacc 
                                               cgttgccgccatcgctgccagac 


SPP00000002_2.0  185 HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYK       
                     HLLLARSPQCPVVVDTMQNQSSQLYAALPERLY+IQEGRILYK       
                     HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYVIQEGRILYK       
KQ005701.1:subs46254 ccccgaacctcggggaacacaacctggccgactgacggaacta       
                     atttcggcagctttactaaaggatacctcagtattaaggttaa       
                     taggcgccgctgggccggcgccgccaagtggccacggcgcccg       


SPP00000002_2.0  228                        GKSGPWNYNPEEVRAVLEKLHS     
                                            GKSGPWNYNPEEVRAVLEKL+S     
                                            GKSGPWNYNPEEVRAVLEKLYS     
KQ005701.1:subs46383 GTGGTGA  Intron 3   CAGgatgctatacgggcggcgacta     
                     <0-----[46383:50032]-0>gacgcgaaacaatgcttaatag     
                                            tatctgcctagattttgagcct     


//
Making a G in phase 1 intron
Making a D in phase 1 intron
>KQ005701.1:subseq(34216683,100098).pep
MGLPQSGLWVKKLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTGMTRNPHFSHDN
WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWDFMQGNRPLVLN
FGSCTXPSFMFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNMDIRNHRNLQDR
LQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYVIQEGRILYKGKSGPWNYNPEEV
RAVLEKLYS
//
>KQ005701.1:subseq(34216683,100098).[29816:50098].sp
ATGGGGCTGCCCCAGTCAGGGCTGTGGGTGAAGAAGCTCTGGGTGCTCTTGGAGGTGGCT
GTCCATGTGGTCGTGGGTAAAGTGCTTCTGATATTGTTTCCAGACAGAGTCAAGCGGAAC
ATCCTGGCCATGGGCGAGAAGACCGGTATGACCAGGAACCCTCATTTCAGCCACGACAAC
TGGATCCCGACCTTTTTCAGCACGCAGTATTTCTGGTTCGTCTTGAAGGTCCGTTGGCAG
CGACTAGAGGACACGACTGAGCTAGGGGGTCTGGCCCCAAACTGCCCAGTGGTCCGCCTC
TCAGGACAGAGGTGCAACATTTGGGACTTTATGCAAGGCAATAGGCCACTGGTGCTGAAT
TTTGGAAGTTGTACCTGACCTTCATTTATGTTCAAATTCGACCAATTCAAGAGGCTTATT
GAAGACTTTAGTTCCATAGCAGATTTTCTCATCATTTACATTGAAGAAGCACATGCATCA
GATGGCTGGGCTTTTAAGAACAACATGGACATCAGAAATCACCGGAACCTTCAGGACCGC
CTACAGGCAGCCCATCTACTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTGGACACC
ATGCAGAACCAGAGCAGCCAGCTCTACGCAGCACTGCCTGAGAGGCTCTACGTAATCCAG
GAGGGCAGGATCCTCTACAAGGGTAAATCTGGCCCTTGGAACTACAATCCAGAGGAAGTT
CGTGCTGTTCTGGAAAAGCTCTACAGT
//
KQ005701.1:subseq(34216683,100098)	GeneWise	match	29816	50098	540.11	+	.	KQ005701.1:subseq(34216683,100098)-genewise-prediction-1
KQ005701.1:subseq(34216683,100098)	GeneWise	cds	29816	30152	0.00	+	0	KQ005701.1:subseq(34216683,100098)-genewise-prediction-1
KQ005701.1:subseq(34216683,100098)	GeneWise	intron	30153	40453	0.00	+	.	KQ005701.1:subseq(34216683,100098)-genewise-prediction-1
KQ005701.1:subseq(34216683,100098)	GeneWise	cds	40454	40597	0.00	+	2	KQ005701.1:subseq(34216683,100098)-genewise-prediction-1
KQ005701.1:subseq(34216683,100098)	GeneWise	intron	40598	46182	0.00	+	.	KQ005701.1:subseq(34216683,100098)-genewise-prediction-1
KQ005701.1:subseq(34216683,100098)	GeneWise	cds	46183	46382	0.00	+	2	KQ005701.1:subseq(34216683,100098)-genewise-prediction-1
KQ005701.1:subseq(34216683,100098)	GeneWise	intron	46383	50032	0.00	+	.	KQ005701.1:subseq(34216683,100098)-genewise-prediction-1
KQ005701.1:subseq(34216683,100098)	GeneWise	cds	50033	50098	0.00	+	0	KQ005701.1:subseq(34216683,100098)-genewise-prediction-1
//

genewise output
Score 20.46 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000002_2.0  163 WAFKNNMDIRNHQNLQDRLQ                              
                     W  +N++  R+ +NLQD ++                              
                     WVAQNSVKCRSSENLQDMVR                              
KQ005701.1:sub-20371 tggcaagatcatgatcgaga                              
                     gtcaagtagggcaataattg                              
                     gttgtctatttcgtagcggg                              


//
>KQ005701.1:subseq(34216683,100098).pep
WVAQNSVKCRSSENLQDMVR
//
>KQ005701.1:subseq(34216683,100098).[20371:20310].sp
TGGGTTGCTCAGAATAGCGTTAAATGTCGTAGTTCCGAGAATTTACAGGACATGGTGAGG
//
KQ005701.1:subseq(34216683,100098)	GeneWise	match	20371	20312	20.46	-	.	KQ005701.1:subseq(34216683,100098)-genewise-prediction-1
KQ005701.1:subseq(34216683,100098)	GeneWise	cds	20371	20312	0.00	-	0	KQ005701.1:subseq(34216683,100098)-genewise-prediction-1
//
