_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-11
 Query name: gi|197103028|ref|NP_001127136.1| ethanolaminephosphotransferase 1 [Pongo abelii] >gi|182636715|sp|Q5NV96.2|EPT1_PONAB RecName: Full=Ethanolaminephosphotransferase 1; AltName: Full=Selenoprotein I; Short=SelI >gi|56541799|emb|CAI30284.1| hypothetical protein [Pongo abelii]
 Query range: 19-397  (total 397)

 Target: /data/www-rg/seblastian_results/876750236/tempfiles/temptarget.fasta
 Chromosome: KN979485.1:subseq_1107263,122840_ Strand: -
 Positions:
 -Exon 1  72769        72840
 -Exon 2  72227        72335
 -Exon 3  69935        70009
 -Exon 4  65540        65802
 -Exon 5  63799        63907
 -Exon 6  55762        55810
 -Exon 7  53953        54133
 -Exon 8  52556        52738
 -Exon 9  50000        50095

 Redox box: no

Query   KYSAVDTNPLSLYVMHPFWNTIVK <---Intron---> VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASA <---Intron---> PGHKHVP
        /||||||||||||||||||||||| <   433bp    > ||||||||||||||||||||||||||||||||||||| <   2217bp   > |||||||
Target  QYSAVDTNPLSLYVMHPFWNTIVK                VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASA                PGHKHVP
        ctagggaacctctgaccttaaaga                gtcatcgcacaattgtccggtatccagttgcgttgtg                cgcacgc
        aagctacactctattactgactta                ttccgtccattctcgttttttattttcatacatacc                ccgaaatc
        gcttgtctattgtcgtatgctaag                atttggactgatttctggtacttaagactttcctca                aatcgtgt
                                                                                                            

Query   DWVWIVVGILNFVAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDNWSYVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILS
        |||||||||||||||||| <   4132bp   > |||||||||||||||||||||||||/|| |||||||||||||||||||||||||||||||||||||
Target  DWVWIVVGILNFVAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILS
        gtgtagggacatggtacg                ggggacgcaaataactggctgcgcgatttgttggagttatgagtaggagtgctccctggttttact
        agtgtttgttattcact                agtagaacggcacgcctgattaagtaggcgtatttctacttgggccgtgttttatttgttttctttc
        cgtgtagcccccaccta                ttgcagatcacttctcaggttttcgttgattcttatttcctaaagttctgttttcgagatgttccgc
                                                                                                            

Query   HWEKYNTGILFLPWGYDISQV <---Intron---> TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIG <---Intron---> CALCVTLPMS
        ||||||||||||||||||||| <   1632bp   > ||||||||||||||||||||||||||||||||/|||| <   7988bp   > ||||||||||
Target  HWEKYNTGILFLPWGYDISQV                TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTSMIIG                CALCVTLPMS
        ctgataagactcctgtgaacg                aattgtagagggggggttgctctatttagctataaag                tgttgaccaa
        agaaaacgttttcggaatgat                ctcttattccttgtacgaactttattagattccttt                ggctgtctctg
        cgagtcagttcgagatctcgg                ttttccagtatgatgcgtatcgttcatacactagtt                ttgatgttagt
                                                                                                            

Query   LLNFFR <---Intron---> SYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFANST <---Intron---> CQ
        |||||| <   1628bp   > |||||||| ||||||/|||||||||||||||||||||||||||||||||||||||||||| <   1214bp   > ||
Target  LLNFFR                SYKNNTLKHNSVYEAVVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFANST                CQ
        tcatta                ataaaatacatgtggggctttcttctattagtacttctgatgcccagtttaggagtgaaa                tc
        ttattg                gaaaactaaactaacttcttccgtttttcccgttgcccattatacgttatttgcctcagc                ga
        aactc                actatccgactactatgtcattccggctgtaggctgatattagattaacctgtaactccca                tg
                                                                                                            

Query   LIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV <---Intron---> VKQLSSHFQIYPFSLRKPNSDULGM
        ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| <   2460bp   > |||||||||||||||||||||||||
Target  LIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTMAFTLAHIHYGVRV                VKQLSSHFQIYPFSLRKPNSDULGM
        cagtcaaaactcatattcgccttggtggacgggttggaacctataagtacgcactggcg                gaccaactcatctttaacatgtcga
        tttgatggcggcctagtttcttttttttatgtccatagtttactctctctcataagtgt                taatggatatactctgacacagtgt
        gttcagttcgtatgtgggttccgtcagacaaactctgctcgtaaagtttgcccttaaag                agggccttgtcccaggaacataaag
                                                                                                        *   

Query   EEKNIGL
        |||||||
Target  EEKNIGL
        ggaaagc
        aaaatgt
        aagttcg
               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1302 ; UGA-SECIS: 1332

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN979485.1:subseq_1107263,122840_ Strand = - Positions = 48697 - 48619
 Found by:  Infernal (score=27.74) Covels (score=21.25)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -6.11

         ..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...(({({((......{[[[((((((({(((...................)))})))))))]]]}..--..-))})}))...
 target  GAAGUUUGUGCUUGAAUGAAGAGUGUAUCUUAAACCUCCUUUUUUUGGACAGGCUGCACUUGGAUAA--CA-UAGGCACCAC
                         ****           ^^^                           ****