------- SECIS element -- id:1 -- grade:A ---- Chromosome = KN983522.1:subseq_4011012,130531_ Strand = + Positions = 81626 - 81700 Found by: Infernal (score=30.25) Covels (score=39.15) Stem2 length = 11 Apical loop length = 13 Insertion in stem2 = 0, 0 Free Energy = -14.32 ..(((((((.......(((((((((((((((...............))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ..([((([(---(...{[[{(({(((((((((.............)))))))))}))}]]}.....-..))])))]).. target GUGACUGAC---AUUAUGAAGGCCUGUACUGAAGACAGCAAGCUGUUAGUACAGACCAGAUGCUUU-CUUGGCAGGCUC **** **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = KN983522.1:subseq_4011012,130531_ Strand = + Positions = 32931 - 33001 Found by: Infernal (score=15.43) Covels (score=6.46) Stem2 length = 10 Apical loop length = 11 Insertion in stem2 = 0, 0 Free Energy = -20.34 ..(((((((.........(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ...((({((.........([[{((((((((((......-..-----...))))))))))}]])..--..-.))})))... target CCAGGCUGGCUGACAGAGUGAGACCCCAUCUCAAAAAA-AG-----GGAGAGGUGGGGUGGAGAC--AU-UCCUGUCCUC **** ^^^ ****