_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-13
 Query name: gi|914897410|ref|XP_005317271.2| PREDICTED: selenoprotein K [Ictidomys tridecemlineatus]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/928059496/tempfiles/temptarget.fasta
 Chromosome: KN981158.1:subseq_18483168,101621_ Strand: +
 Positions:
 -Exon 1  46699        46717
 -Exon 2  50013        50103
 -Exon 3  51546        51629
 -Exon 4  52577        52664

 Redox box: no

Query   MVYISNG <---Intron---> QVLDSRSQSPWRLSLITDFFWGIAEFVVLF <---Intron---> FKTLLQQDVKKRRGYGNSSDSRYDDGRG <-
        ||||||| <   3295bp   > |||||||||||||||||||||||||||||| <   1442bp   > ||||||||||||| |||||||||||||| < 
Target  MVYISNG                QVLDSRSQSPWRLSLITDFFWGIAEFVVLF                FKTLLQQDVKKRRSYGNSSDSRYDDGRG   
        agtatag                cgtgacactctatttaagtttgaggtggtt                taaccccggaaaaatgattgtatgggag   
        ttatca                gattagggaccggtcttcattggtcattttt                tacttaaataagggagaccacgaaaggg   
        gtccgc                aaggccgtgtagaatgaatccgaatgtgtg                tcatgtgatgaaaactacattcatttaa    
                                                                                                            

Query   --Intron---> PPGNPPRRMGRINHLQGPSPPPMGGGUGR
          947bp    > |||||||||||||||/||||||| |||||
Target               PPGNPPRRMGRINHLRGPSPPPMAGGUGR
                     ccgacccaagaaacccgcacccagggtga
                     ccgaccggtggtaatggcgccctcggggg
                    gaaactcaagtacttgtcttttagttaaag
                                               *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 385 ; UGA-SECIS: 391

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN981158.1:subseq_18483168,101621_ Strand = + Positions = 53050 - 53137
 Found by:  Infernal (score=23.35) Covels (score=35.47)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -10.51

         ..(((((((..............(((((((((((((((.................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[((((({(((((...................)))))})))))]]}......-...))))})...
 target  UGCUCUGUGUCCUCACAGAUGAAUGAGGUCAUGCUAGGAAUUCCCUCUGCAGGGAACUGGCCUGACUGACAUGCAG-UUCCAUAAAUGC
                                ****           ^^                          ****