_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-74
 Query name: gi|226531023|ref|NP_001152770.1| glutathione peroxidase 1 [Macaca mulatta]
 Query range: 1-197  (total 198)

 Target: /data/www-rg/seblastian_results/541052475/tempfiles/temptarget.fasta
 Chromosome: KN980273.1:subseq_2721472,100812_ Strand: +
 Positions:
 -Exon 1  49967        50212
 -Exon 2  50462        50815

 Redox box: no

Query   MCAARLAAAA---VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ <---Intron---> EN
        ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   249bp    > ||
Target  MCAARLAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ                EN
        atggccgggggctgtgttgcccggggcgacgtccgagccagaggtctgaagcgtacaagcccccgccgcggcgtctactgcc                ga
        tgccgtcccccactactccgctcggactgtgctggattttaatcctggcctgaacataataggtgcggttttgtcgaatgaa                aa
        gtttgagtagcgggcccggcggccggtgcgccggcggatcgtggccactacgcccggcggggctgcgcgggcccgccgtgtg                gc
                                                      *                                                     

Query   AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTI
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Target  TKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKFITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTI
        aaaggacatcatgccgggtgcatactgatggaggggccctgtccggccgcagggagcaagcataattcgtcagggtatgatcggcgggcgcatacctcaa
        caaaattactaatgcgggtacattttaagatagcgcacttcttgactcccgaacccttcacattcgcctggaatcgataatttgcagtctggagggtact
        cgcagtgtccgccatttgcgcccgccggcggctgggctccccgggcgacccctctgcgcccgcccgtggcccttcgccggcggctctgcacgcccccgct
                                                                                                            

Query   DIEPDIEALLSQGPSS
        ||||||||||||||||
Target  DIEPDIEALLSQGPSS
        gagcgaggcctcgcaa
        atacatacttcagcgg
        ccgtccacagtatcct
                        
 Sequence until next stop: 
GTCTAG
 V  * 

 Distance CDS-SECIS: 56 ; UGA-SECIS: 515

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN980273.1:subseq_2721472,100812_ Strand = + Positions = 50872 - 50939
 Found by:  Infernal (score=34.1) Covels (score=26.45)
 Stem2 length = 11   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -18.4

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((.---....{[[(((((((.(((((........-----..))))))))))))]]}..--..-..))))))..
 target  GGGUUUUCA---UCUAUGAGGGUGUUUCCUCUAAACCUAC-----AAGGAGGAACACCUGAUAA--UA-CAGAAAAUAC
                         ****            ^^^                       ****