genewise output
Score 540.31 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000002_2.0    1 MGLPQPGLWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
                     MGLPQ GLW+K+LWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
                     MGLPQSGLWVKKLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
KN985624.1:subs50000 agccctgctgaactgctggggcggggagccactcgagacaacgaggaag 
                     tgtcacgtgtaatgtttatctatttgattttttcagtagattctgaacg 
                     gggcgaggggggcgatgggtctgcgtagtgagtacacggccgcgcggct 


SPP00000002_2.0   50 MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
                     MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
                     MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
KN985624.1:subs50147 aaaacctacgatacattaacttttgtagctcccggaagcggcgcatcgg 
                     tcgacatgaaagtccttgcaatgtttatggagtaaccatggtccagctt 
                     gcgcctcctccgcgctcccgtcgccggctggaagcgtgaatgcaccggc 


SPP00000002_2.0   99 RLSGQRCNIWEFMQ                          NRPLVLNFG 
                     RLSGQRCNIW+FMQ                          NRPLVLNFG 
                     RLSGQRCNIWDFMQ          G:A[gcc]        NRPLVLNFG 
KN985624.1:subs50294 cctgcataatgtacGGTCAGCA  Intron 1   CAGCCaaccgcatg 
                     gtcgaggatgatta <1-----[50337:60739]-1>  agctttatg 
                     ccaaggcctgctga                          tgagggtta 


SPP00000002_2.0  123 SCTUPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS            
                     SCT PSFMFKFDQFKRLIEDFSSIADFL+IYIEEAHAS            
                     SCTXPSFMFKFDQFKRLIEDFSSIADFLIIYIEEAHAS            
KN985624.1:subs60769 atatcttatatgctaacaggtataggtcaatagggcgt            
                     ggcgcctttataatagttaatgctcattttataacacc            
                     ttcatatgcaccacggttacttcaattcctctaaataa            


SPP00000002_2.0  161                           GWAFKNNMDIRNHQNLQDRLQAA 
                                               GWAFKNNMDIRNH+NLQDRLQAA 
                               D:D[gat]        GWAFKNNMDIRNHRNLQDRLQAA 
KN985624.1:subs60883 GGTACAGA  Intron 2   TAGATgtgtaaaagaaaccaccgcccgg 
                      <1-----[60884:62421]-1>  ggctaaatatgaagataagtacc 
                                               cgttgccgccatcgctgccggac 


SPP00000002_2.0  185 HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYK       
                     HLLLARSPQCPVVVDTMQNQSSQLYAALPERLY+IQEGRILYK       
                     HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYVIQEGRILYK       
KN985624.1:subs62493 ccccgaacctcggggaacacaacctggccgactgacggaacta       
                     atttcggcagctttactaaaggatacctcagtattaaggttaa       
                     taggcgccgctgagccggcgccgccaagtggccacggcgcccg       


SPP00000002_2.0  228                        GKSGPWNYNPEEVRAVLEKLHS     
                                            GKSGPWNYNPEEVRAVLEKL+S     
                                            GKSGPWNYNPEEVRAVLEKLYS     
KN985624.1:subs62622 GTGGTGA  Intron 3   CAGgatgctatacgggcggcgacta     
                     <0-----[62622:66252]-0>gacgcgaaacaatgcttaatag     
                                            tatctgcctagattttgagcct     


//
Making a A in phase 1 intron
Making a D in phase 1 intron
>KN985624.1:subseq(7028008,116318).pep
MGLPQSGLWVKKLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTGMTRNPHFSHDN
WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWDFMQANRPLVLN
FGSCTXPSFMFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNMDIRNHRNLQDR
LQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYVIQEGRILYKGKSGPWNYNPEEV
RAVLEKLYS
//
>KN985624.1:subseq(7028008,116318).[50000:66318].sp
ATGGGGCTGCCCCAGTCAGGGCTGTGGGTGAAGAAGCTCTGGGTACTTTTGGAGGTGGCT
GTCCATGTGGTCGTGGGTAAAGTGCTTCTGATACTGTTTCCAGACAGAGTCAAGCGGAAC
ATCCTGGCCATGGGCGAGAAGACCGGTATGACCAGGAACCCCCATTTCAGCCATGACAAC
TGGATCCCGACCTTTTTCAGCACCCAGTATTTCTGGTTCGTCTTGAAGGTCCGTTGGCAG
CGACTAGAGGACACGACTGAGCTAGGAGGTCTGGCCCCAAACTGCCCGGTGGTCCGCCTC
TCAGGACAGAGGTGCAACATTTGGGACTTTATGCAAGCCAATAGGCCACTGGTGCTGAAT
TTTGGAAGTTGTACCTGACCTTCATTTATGTTCAAATTCGACCAATTCAAGAGGCTTATT
GAAGACTTTAGTTCCATAGCAGATTTTCTCATCATTTACATTGAAGAAGCACATGCATCA
GATGGCTGGGCTTTTAAGAACAACATGGACATCAGAAATCACCGGAACCTTCAGGACCGC
CTGCAGGCAGCCCATCTACTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTAGTGGACACC
ATGCAGAACCAGAGCAGCCAGCTCTACGCAGCACTGCCTGAGAGGCTCTACGTAATCCAG
GAGGGCAGGATCCTCTACAAGGGTAAATCTGGCCCTTGGAACTACAATCCAGAGGAAGTT
CGTGCTGTTCTGGAAAAGCTCTACAGT
//
KN985624.1:subseq(7028008,116318)	GeneWise	match	50000	66318	540.31	+	.	KN985624.1:subseq(7028008,116318)-genewise-prediction-1
KN985624.1:subseq(7028008,116318)	GeneWise	cds	50000	50336	0.00	+	0	KN985624.1:subseq(7028008,116318)-genewise-prediction-1
KN985624.1:subseq(7028008,116318)	GeneWise	intron	50337	60739	0.00	+	.	KN985624.1:subseq(7028008,116318)-genewise-prediction-1
KN985624.1:subseq(7028008,116318)	GeneWise	cds	60740	60883	0.00	+	2	KN985624.1:subseq(7028008,116318)-genewise-prediction-1
KN985624.1:subseq(7028008,116318)	GeneWise	intron	60884	62421	0.00	+	.	KN985624.1:subseq(7028008,116318)-genewise-prediction-1
KN985624.1:subseq(7028008,116318)	GeneWise	cds	62422	62621	0.00	+	2	KN985624.1:subseq(7028008,116318)-genewise-prediction-1
KN985624.1:subseq(7028008,116318)	GeneWise	intron	62622	66252	0.00	+	.	KN985624.1:subseq(7028008,116318)-genewise-prediction-1
KN985624.1:subseq(7028008,116318)	GeneWise	cds	66253	66318	0.00	+	0	KN985624.1:subseq(7028008,116318)-genewise-prediction-1
//