Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/M.SECp43.1.fa.x.fa -t 3B.fastasub.dir/2.M.SECp43.1.fa.x.fa]
Hostname: [ws101145]

C4 Alignment:
------------
         Query: SPP00000146_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Human (Homo sapiens)
        Target: gi|398925389|gb|JH767724.1|:subseq(6990159,100152) Ceratotherium simum simum unplaced genomic scaffold scaffold00002, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 150
   Query range: 226 -> 284
  Target range: 50173 -> 49999

   227 : GlnSerThrMetGlnThrTyrGluGluValGlyAspAspAlaLeuGluAspProMetPro :   246
         :!!..!|||!       !  !|||:!!  !! !:!!||| !!||||||||||||   ! !
         GluGluThrThrAlaLeuAlaGluLysGlnAspAsnAspProLeuGluAspProTyrLeu
 50173 : GAGGAAACCACAGCTCTGGCTGAAAAGCAAGATAATGACCCATTAGAAGATCCATATCTT : 50116

   247 : GlnLeuAspValThrGluAlaAsnLysGluPheMetGluGlnSerGluGluLeuTyrAsp :   266
         !!.|||:!!:!!  !|||  !|||:!!|||||||||! !:!!!!!|||||||||||||||
         HisLeuAsnIleGluGluLeuAsnGlnGluPheMetValLysThrGluGluLeuTyrAsp
 50115 : CATTTGAATATTGAGGAATTAAACCAAGAGTTTATGGTGAAAACTGAAGAACTCTATGAC : 50056

   267 : AlaLeuMetAspCysHisTrpGlnProLeuAspThrValSerSerGluIlePro :   284
         :!!||||||:!!! !||| !!||||||||||||||||||  !|||:!!||||||
         SerLeuMetAsnTyrHisArgGlnProLeuAspThrValHisSerLysIlePro
 50055 : TCTCTCATGAACTACCACCGGCAGCCTCTGGATACAGTTCACTCTAAAATCCCA : 50000

vulgar: SPP00000146_2.0 226 284 . gi|398925389|gb|JH767724.1|:subseq(6990159,100152) 50173 49999 - 150 M 58 174
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398925389|gb|JH767724.1|:subseq(6990159,100152)	exonerate:protein2genome:local	gene	50000	50173	150	-	.	gene_id 1 ; sequence SPP00000146_2.0 ; gene_orientation .
gi|398925389|gb|JH767724.1|:subseq(6990159,100152)	exonerate:protein2genome:local	cds	50000	50173	.	-	.	
gi|398925389|gb|JH767724.1|:subseq(6990159,100152)	exonerate:protein2genome:local	exon	50000	50173	.	-	.	insertions 0 ; deletions 0
gi|398925389|gb|JH767724.1|:subseq(6990159,100152)	exonerate:protein2genome:local	similarity	50000	50173	150	-	.	alignment_id 1 ; Query SPP00000146_2.0 ; Align 50174 227 174
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
