Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/M.SECp43.1.fa.x.fa -t 3B.fastasub.dir/10.M.SECp43.1.fa.x.fa]
Hostname: [ws101145]

C4 Alignment:
------------
         Query: SPP00000146_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Human (Homo sapiens)
        Target: gi|398921984|gb|JH767785.1|:subseq(3194602,5079440) Ceratotherium simum simum unplaced genomic scaffold scaffold00063, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 100
   Query range: 45 -> 159
  Target range: 50347 -> 49999

    46 : GlyTyrCysPheValGluPheAlaAspLeuAlaThrAlaGluLysCysLeuHisLysIle :    65
         ||||||..!!:!|||.!.|||! !..!||||||.!!|||.!.!:!..!:!!    ! !!:
         GlyTyrAlaTyrValHisPheAspSerLeuAlaAlaAlaAsnArgAlaIleTrpHisMet
 50347 : GGTTATGCCTATGTGCACTTTGACAGCCTGGCCGCTGCCAATAGGGCCATCTGGCACATG : 50290

    66 : AsnGlyLysProLeuProGly<->AlaThrProAlaLysArgPheLysLeu<-><->Asn :    82
         ||||||  !! !|||  !..!     !..!  !!.!   |||||||||!!!      .!.
         AsnGlyValArgLeuAsnAsnArgGlnValTyrValGlyArgPheLysPheProGluGlu
 50289 : AATGGAGTGCGGCTCAACAACCGCCAGGTGTATGTTGGCCGATTCAAATTTCCGGAAGAG : 50230

    83 : TyrAlaThrTyrGlyLysGlnProAspAsnSerProGluTyrSerLeuPheValGlyAsp :   102
            |||.!! ! ! !!:!     !|||!..:!! !!     !!:!:!!||||||  !:!!
         ArgAlaAlaGluValArgThrArgAspArgAlaThrPheThrAsnValPheValLysAsn
 50229 : CGGGCAGCTGAAGTCAGAACCAGGGATAGAGCAACTTTCACCAATGTTTTCGTAAAAAAT : 50170

   103 : LeuThrProAspValAspAspGlyMetLeuTyrGluPhePheValLysValTyrProSer :   122
         !!!  !  !|||:!!||||||! !!  ||| ! |||.!!|||  !:!!   |||  !|||
         PheGlyAspAspMetAspAspGluLysLeuLysGluIlePheSerGlu---TyrGlySer
 50169 : TTTGGAGATGACATGGATGACGAAAAACTGAAGGAAATTTTCAGTGAA---TATGGGTCA : 50113

   123 : CysArgGlyGlyLysValValLeuAspGlnThrGlyValSerLysGlyTyrGlyPheVal :   142
           !..!.!!! !||||||:!!  !|||   !:!|||  !|||||||||!:!|||||||||
         ThrGluSerValLysValIleArgAspAlaSerGlyLysSerLysGlyPheGlyPheVal
 50112 : ACTGAGAGTGTCAAGGTGATAAGAGATGCCAGTGGGAAATCTAAAGGCTTTGGATTTGTG : 50053

   143 : LysPheThrAspGluLeuGluGlnLysArgAlaLeuThrGluCysGlnGly :   159
         !:!!:!  !   .!.  !!     :!!!:!|||:!!  !!!:   !!.|||
         ArgTyrGluThrHisGluAlaAlaGlnLysAlaValLeuAspLeuHisGly
 50052 : AGATATGAGACACATGAGGCTGCCCAAAAGGCTGTGTTAGACCTACATGGA : 50000

vulgar: SPP00000146_2.0 45 159 . gi|398921984|gb|JH767785.1|:subseq(3194602,5079440) 50347 49999 - 100 M 27 81 G 0 3 M 9 27 G 0 6 M 37 111 G 1 0 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398921984|gb|JH767785.1|:subseq(3194602,5079440)	exonerate:protein2genome:local	gene	50000	50347	100	-	.	gene_id 1 ; sequence SPP00000146_2.0 ; gene_orientation .
gi|398921984|gb|JH767785.1|:subseq(3194602,5079440)	exonerate:protein2genome:local	cds	50000	50347	.	-	.	
gi|398921984|gb|JH767785.1|:subseq(3194602,5079440)	exonerate:protein2genome:local	exon	50000	50347	.	-	.	insertions 9 ; deletions 1
gi|398921984|gb|JH767785.1|:subseq(3194602,5079440)	exonerate:protein2genome:local	similarity	50000	50347	100	-	.	alignment_id 1 ; Query SPP00000146_2.0 ; Align 50348 46 81 ; Align 50264 73 27 ; Align 50231 82 111 ; Align 50120 120 120
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
