Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/SP.GPx1.1.fa.x.fa -t 3B.fastasub.dir/1.SP.GPx1.1.fa.x.fa]
Hostname: [ws116055]

C4 Alignment:
------------
         Query: SPP00000017_2.0 # Protein # Glutathione peroxidase 1 (GPx1) # Human (Homo sapiens)
        Target: gi|398925635|gb|JH767723.1|:subseq(47151469,100545) Ceratotherium simum simum unplaced genomic scaffold scaffold00001, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 530
   Query range: 7 -> 203
  Target range: 50575 -> 49996

     8 : AlaAlaAlaAlaAlaAlaGlnSerValTyrAlaPheSerAlaArgProLeuAlaGlyGly :    27
         |||  !:!!|||!.!|||  ! !!  !   |||||||||||||||! !! ! !!!.!|||
         AlaHisSerAlaGlyAlaAlaProSerValAlaPheSerAlaArgArgTrpProAlaGly
 50575 : GCGCACTCAGCTGGAGCAGCGCCCAGTGTAGCCTTCTCTGCGCGCCGCTGGCCGGCGGGG : 50518

    28 : GluProValSerLeuGlySerLeuArgGlyLysValLeuLeuIleGluAsnValAlaSer :    47
         .!.      ||||||||||||! !|||! !|||!.!||||||! !||||||!.!|||:!!
         Asn------SerLeuGlySerProArgAspLysAlaLeuLeuThrGluAsnAlaAlaAla
 50517 : AAC------AGCCTGGGCTCCCCGCGGGACAAGGCGCTGCTCACCGAGAACGCGGCGGCG : 50464

    48 : LeuUnkGlyThrThrValArgAspTyrThrGlnMetAsnGluLeuGlnArgArgLeuGly :    67
         |||   ||||||||||||!:!||||||||||||!!:||||||||||||||||||! !|||
         Leu***GlyThrThrValGlnAspTyrThrGlnIleAsnGluLeuGlnArgArgArgGly
 50463 : CTCTGAGGCACAACGGTCCAGGACTACACCCAGATCAATGAGCTGCAGCGGCGCCGTGGG : 50404

    68 : ProArgGlyLeuVal--ValLeuGlyPheProCysAsnGlnPheGlyHisGlnGluAsnA :    87
         |||||||||||||||##   |||||||||! !|||||||||||| !!|||||||||||||
         ProArgGlyLeuVal##---LeuGlyPheLeuCysAsnGlnPheTrpHisGlnGluAsnA
 50403 : CCCCGCGGCCTGGTCGT---CTCGGCTTCCTGTGCAACCAGTTCTGGCATCAGGAGAACG : 50345

    88 : laLysAsnGluGluIleLeuAsnSerLeuLysTyrValArgProGlyGlyGlyPheGluP :   107
         ||||||||||||||||||||||||||||||||  !! !||||||! !|||||||||||| 
         laLysAsnGluGluIleLeuAsnSerLeuLysArgAspArgProAspGlyGlyPheGluA
 50344 : CCAAGAACGAAGAGATCCTGAATTCCCTCAAGCGCGACCGACCCGACGGCGGGTTCGAGG : 50285

   108 : roAsnPheMetLeuPheGluLysCysGluValAsnGlyAlaGlyAlaHisProLeuPheA :   127
         !!||||||! !|||!!.|||||| !!||||||!!.||||||  !||||||  !! !!   
         laAsnPheThrLeuLeuGluLysArgGluValLysGlyAlaGlnAlaHisSerSer***P
 50284 : CCAACTTCACGCTCTTGGAGAAGCGCGAGGTGAAGGGCGCGCAGGCGCACAGCTCTTAGC : 50225

   128 : laPheLeuArgGluAlaLeuPro-AlaProSerAspAspAlaThrAlaLeuMetThrAsp :   146
         !!! !! !|||..!  !! !|||#|||   !!!!!:||||||||||||! !! !|||:!!
         roSerCysArgArgLeuCysPro#Ala---ArgGluAspAlaThrAlaProLysThrAsn
 50224 : CTTCCTGCCGGAGGCTCTGCCCACGCC---AGAGAGGACGCCACTGCGCCCAAGACCAAC : 50170

   147 : ProLysLeuIleThrTrpSerProValCysArgAsnAspValAlaTrpAsnPheGluLys :   166
          !!|||!!!|||||||||||||||||||||!.!||||||:!!||||||||||||:!!|||
         SerLysPheIleThrTrpSerProValCysHisAsnAspLeuAlaTrpAsnPheLysLys
 50169 : TCCAAGTTCATCACCTGGTCTCCAGTGTGCCACAACGACCTCGCCTGGAACTTCAAGAAG : 50110

   167 : PheLeuValGlyProAspGlyValProLeuArgArgTyrSerArgArgPheGlnThrIle :   186
         |||! !|||||||||||||||||||||:!!|||! !|||.!! !!||||||! !||||||
         PheProValGlyProAspGlyValProValArgThrTyrGlyCysArgPheProThrIle
 50109 : TTCCCGGTGGGCCCGGACGGTGTGCCTGTGCGCACGTACGGCTGCCGCTTTCCGACCATC : 50050

   187 : AspIleGluProAspIleGluAlaLeuLeuSerGlnGlyProSerCysAla :   203
         ||||||||||||||||||||||||||||||||||||||||||.!!||||||
         AspIleGluProAspIleGluAlaLeuLeuSerGlnGlyProGlyCysAla
 50049 : GACATCGAGCCCGACATCGAAGCCCTCCTGTCCCAGGGGCCCGGCTGTGCC : 49997

vulgar: SPP00000017_2.0 7 203 . gi|398925635|gb|JH767723.1|:subseq(47151469,100545) 50575 49996 - 530 M 21 63 G 2 0 M 42 126 F 0 2 G 1 0 M 61 183 F 0 1 M 1 3 G 1 0 M 67 201
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398925635|gb|JH767723.1|:subseq(47151469,100545)	exonerate:protein2genome:local	gene	49997	50575	530	-	.	gene_id 1 ; sequence SPP00000017_2.0 ; gene_orientation .
gi|398925635|gb|JH767723.1|:subseq(47151469,100545)	exonerate:protein2genome:local	cds	49997	50575	.	-	.	
gi|398925635|gb|JH767723.1|:subseq(47151469,100545)	exonerate:protein2genome:local	exon	49997	50575	.	-	.	insertions 0 ; deletions 4 ; frameshifts 3
gi|398925635|gb|JH767723.1|:subseq(47151469,100545)	exonerate:protein2genome:local	similarity	49997	50575	530	-	.	alignment_id 1 ; Query SPP00000017_2.0 ; Align 50576 8 63 ; Align 50513 31 126 ; Align 50385 74 183 ; Align 50201 135 3 ; Align 50198 137 201
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
