
genewise output
Score 343.53 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001550_2.0    1 MAQKLWGSCLFSLFMAALAQETLNPQKSK                     
                     M ++   SCLF LF+   AQ T   QK K                     
                     MIRRFLASCLFPLFVVGFAQLTPESQKMK                     
gi|398920810|gb79011 aaccttgttctcctgggtgccacgtcaaaGTGAGTG  Intron 1    
                     ttggttccgttcttttgtcatccacaata<0-----[79098:82518] 
                     gtggcgccttcggcgccttggcagaaggg                     


SPP00001550_2.0   30    VDCNKGVTGTVYEYGANTIDGGEFVNFQQYAGKHILFVNVASFCGL 
                        +DC KGVTGT+YEYGA T++G E++ F+QYAGKH+LF+NVA++ GL 
                        MDCYKGVTGTIYEYGALTLNGEEYIQFKQYAGKHVLFINVATYXGL 
gi|398920810|gb82516 CAGagttaggagaatgtggcacagggtactactggacgctaaggattgt 
                     -0>tagaagtcgctaaagctctagaaatataaacgaattttatccaggt 
                        gtctgggaccctgtacccctcggtcgcggtgcgccctctgcctacg 


SPP00001550_2.0   76 TATYP                          LNTLQEELKPFNVTVLGF 
                     TA YP                          LN LQEELKPF V +LGF 
                     TAQYP          E:E[gaa]        LNALQEELKPFGVVLLGF 
gi|398920810|gb82657 agctcGGTAAGAA  Intron 2   CAGAAcagccggcactgggttgt 
                     ccaac <1-----[82673:87112]-1>  tactaaatactgttttgt 
                     atgtt                          gtaagggggtttatggct 


SPP00001550_2.0  100 PCNQFGKQEPGKNSEILLGL                          YVR 
                     PCNQFGKQEPGKNSEIL GL                          YVR 
                     PCNQFGKQEPGKNSEILFGL           K:K[aag]       YVR 
gi|398920810|gb87169 ctactgacgcgaatgactgcAAGTAAGTG  Intron 3   CAGGtgc 
                     cgaatgaaacgaacatttgt  <2-----[87231:87717]-2> atg 
                     cccgtaaaaaaacagcttgc                          tgt 


SPP00001550_2.0  124 PGGGYVPNFQLFEKGDVNGDNEQKVFSFLK                    
                     PGGG+VPNFQLFEKGDVNG+ EQKVF+FLK                    
                     PGGGFVPNFQLFEKGDVNGEKEQKVFTFLK                    
gi|398920810|gb87728 cgggtgcatcctgagggaggagcagtatca                    
                     cgggttcatattaagatagaaaaattctta                    
                     attctccctgctgagtgtaaaaggctccgg                    


SPP00001550_2.0  154                        NSCPPTSELFGSPEHLFWDPMKVHDI 
                                            NSCPPTS+L+GS   LFW PMKVHDI 
                                            NSCPPTSDLLGSSNQLFWAPMKVHDI 
gi|398920810|gb87818 GTAAGTC  Intron 4   CAGattccatgctgttaccttgcaagcga 
                     <0-----[87818:89302]-0>acgccccattgccaattgcctataat 
                                            ccctactttgcaacaccggcggctcc 


SPP00001550_2.0  180 RWNFEKFLVGPDGVPVMRWFHHTPVRIVQSDIMEYLNQ            
                     RWNFEKFLVGPDGVPVMRWFH   V  V+SDI+EYL Q            
                     RWNFEKFLVGPDGVPVMRWFHRASVSTVKSDILEYLKQ            
gi|398920810|gb89381 ctatgatcggcgggcgacttccgtgaagatgacgtcac            
                     ggataatttgcagtcttggtagcctgctacattaataa            
                     cgctggcggattgctcgcgccgtatcacgaccggcggg            


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|398920810|gb|JH767833.1|:subseq(2505861,139506).pep
MIRRFLASCLFPLFVVGFAQLTPESQKMKMDCYKGVTGTIYEYGALTLNGEEYIQFKQYA
GKHVLFINVATYXGLTAQYPELNALQEELKPFGVVLLGFPCNQFGKQEPGKNSEILFGLK
YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSNQLFWAPMKVHDIR
WNFEKFLVGPDGVPVMRWFHRASVSTVKSDILEYLKQ
//
