
genewise output
Score 330.93 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001549_2.0    1 MVTELRVFYLVPLLLASYVQTTPRPEKMK                     
                     M+       L PL +  + Q TP  +KMK                     
                     MIRRFLASCLFPLFVVGFAQLTPESQKMK                     
gi|398920810|gb79008 aaccttgttctcctgggtgccacgtcaaaGTGAGTG  Intron 1    
                     ttggttccgttcttttgtcatccacaata<0-----[79095:82515] 
                     gtggcgccttcggcgccttggcagaaggg                     


SPP00001549_2.0   30    MDCYKDVKGTIYDYEALSLNGKEHIPFKQYAGKHVLFVNVATYCGL 
                        MDCYK V GTIY+Y AL+LNG+E+I FKQYAGKHVLF+NVATY GL 
                        MDCYKGVTGTIYEYGALTLNGEEYIQFKQYAGKHVLFINVATYXGL 
gi|398920810|gb82513 CAGagttaggagaatgtggcacagggtactactggacgctaaggattgt 
                     -0>tagaagtcgctaaagctctagaaatataaacgaattttatccaggt 
                        gtctgggaccctgtacccctcggtcgcggtgcgccctctgcctacg 


SPP00001549_2.0   76 TIQYP                          LNALQEDLKPFGLVILGF 
                     T QYP                          LNALQE+LKPFG+V+LGF 
                     TAQYP          E:E[gaa]        LNALQEELKPFGVVLLGF 
gi|398920810|gb82654 agctcGGTAAGAA  Intron 2   CAGAAcagccggcactgggttgt 
                     ccaac <1-----[82670:87109]-1>  tactaaatactgttttgt 
                     atgtt                          gtaagggggtttatggct 


SPP00001549_2.0  100 PCNQFGKQEPGDNLEILPGL                          YVR 
                     PCNQFGKQEPG N EIL GL                          YVR 
                     PCNQFGKQEPGKNSEILFGL           K:K[aag]       YVR 
gi|398920810|gb87166 ctactgacgcgaatgactgcAAGTAAGTG  Intron 3   CAGGtgc 
                     cgaatgaaacgaacatttgt  <2-----[87228:87714]-2> atg 
                     cccgtaaaaaaacagcttgc                          tgt 


SPP00001549_2.0  124 PGKGFLPNFQLFAKGDVNGENEQKIFTFLK                    
                     PG GF+PNFQLF KGDVNGE EQK+FTFLK                    
                     PGGGFVPNFQLFEKGDVNGEKEQKVFTFLK                    
gi|398920810|gb87725 cgggtgcatcctgagggaggagcagtatca                    
                     cgggttcatattaagatagaaaaattctta                    
                     attctccctgctgagtgtaaaaggctccgg                    


SPP00001549_2.0  154                        RSCPHPSETVVMSKHTFWEPIKVHDI 
                                             SCP  S+ +  S   FW P+KVHDI 
                                            NSCPPTSDLLGSSNQLFWAPMKVHDI 
gi|398920810|gb87815 GTAAGTC  Intron 4   CAGattccatgctgttaccttgcaagcga 
                     <0-----[87815:89299]-0>acgccccattgccaattgcctataat 
                                            ccctactttgcaacaccggcggctcc 


SPP00001549_2.0  180 RWNFEKFLVGPDGIPVMRWFHQAPVSTVKSDIMAYLSHFKT         
                     RWNFEKFLVGPDG+PVMRWFH+A VSTVKSDI+ YL  FK+         
                     RWNFEKFLVGPDGVPVMRWFHRASVSTVKSDILEYLKQFKS         
gi|398920810|gb89378 ctatgatcggcgggcgacttccgtgaagatgacgtcactat         
                     ggataatttgcagtcttggtagcctgctacattaataatac         
                     cgctggcggattgctcgcgccgtatcacgaccggcgggcac         


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|398920810|gb|JH767833.1|:subseq(2505864,139500).pep
MIRRFLASCLFPLFVVGFAQLTPESQKMKMDCYKGVTGTIYEYGALTLNGEEYIQFKQYA
GKHVLFINVATYXGLTAQYPELNALQEELKPFGVVLLGFPCNQFGKQEPGKNSEILFGLK
YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSNQLFWAPMKVHDIR
WNFEKFLVGPDGVPVMRWFHRASVSTVKSDILEYLKQFKS
//
