
genewise output
Score 399.86 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000010_1.0    1 MVAATVAAAWLLLWAAACAQQEQDFYDFKAVNIRGKLVSLEKYRGS    
                     MVAA VAA WLLL AAACAQ+EQDFYDFK VNIRGKLVSLEKYRGS    
                     MVAALVAA-WLLLAAAACAQREQDFYDFKVVNIRGKLVSLEKYRGS    
gi|398921711|gb49946 agggcggg tcccggggtgccgcgttgtaggaacgatgtcgatcgt    
                     ttccttcc gtttccccgcagaaataatattatggattctaaaggc    
                     ggtagggg ggcggcgccgggggcccccggcccgcgggggggccgg    


SPP00000010_1.0   47                        VSLVVNVASECGFTDQHYRALQQLQR 
                                            VSLVVNVASECGFTDQHYRALQQLQR 
                                            VSLVVNVASECGFTDQHYRALQQLQR 
gi|398921711|gb50081 GTGAGTG  Intron 1   CAGgtcggaggagtgtagcctcgcccccc 
                     <0-----[50081:54657]-0>tctttatcgaggtcaaaagctaatag 
                                            gcgggcgtcgtccacgccccgggggg 


SPP00000010_1.0   73 DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT 
                     DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAV  
                     DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVI 
gi|398921711|gb54736 gcgccctagcgtctactgccgcgaaagagatgccatagttcataaagga 
                     atgcaatattctcgaatgaaacagaaatagtcggcagtctcttgatctt 
                     cggcccctgtcccccgtcgggccccggcgccccccctctccgtcgtacc 


SPP00000010_1.0  122 GTGAHPAFKYLA                          TSGKEPTWNFW 
                     GTGAHPAFKYL                           TSGKEPTWNFW 
                     GTGAHPAFKYLT          Q:Q[cag]        TSGKEPTWNFW 
gi|398921711|gb54883 gaggccgtatcaCGTAAGTC  Intron 2   TAGAGatgagcatatt 
                     gcgcacctaatc <1-----[54920:56443]-1>  ccgaaccgatg 
                     cttcctccgcgc                          ttgggccgccg 


SPP00000010_1.0  146 KYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL        
                     KYLVAPDGKVVGAWDPTVSVEE+RP IT LVRKLIL KREDL        
                     KYLVAPDGKVVGAWDPTVSVEEIRPHITELVRKLILKKREDL        
gi|398921711|gb56479 attggcggaggggtgcagtgggaaccaagcgaacacaacggc        
                     aattccagattgcgacctctaatgcatcattgatttaagaat        
                     gcagcacgagagtgcacgggggcgtccaacgggccgggaacg        


//
Making a Q in phase 1 intron
>gi|398921711|gb|JH767796.1|:subseq(4998195,106604).pep
MVAALVAAWLLLAAAACAQREQDFYDFKVVNIRGKLVSLEKYRGSVSLVVNVASECGFTD
QHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVI
GTGAHPAFKYLTQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPHITELVRKLIL
KKREDL
//
