
genewise output
Score 819.17 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000035_1.0   35 AGQRDYDLLVVGGGSGGLACAKE                           
                     AG++DYDLLV+GGGSGGLACAKE                           
                     AGRQDYDLLVIGGGSGGLACAKE          A:A[gcc]         
gi|398920536|gb36357 ggccgtgccgagggtggcgtgagGGTACGTG  Intron 1   CAGCC 
                     cggaaaattttgggcggtcgcaa <1-----[36427:50000]-1>   
                     agggcctcggtcgacccgcttga                           


SPP00000035_1.0   59 AQLGRKVAVVDYVEPSPQ                          TRWGL 
                     AQLG+KVA+VDYVEPSP+                          TRWGL 
                     AQLGKKVALVDYVEPSPR          G:G[ggc]        TRWGL 
gi|398920536|gb50003 gccgaaggtggtggctcaGGTAGGCA  Intron 2   CAGGCaatgc 
                     catgaatcttaatacccg <1-----[50058:50406]-1>  cgggt 
                     tggagggcggctggtcta                          cggct 


SPP00000035_1.0   83 GGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHD        
                     GGTCVNVGCIPKKLMHQAALLGG+I+DAP+YGWEVAQ VPHD        
                     GGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWEVAQLVPHD        
gi|398920536|gb50424 ggatgaggtacaacaccggccggaacggcctgtgggctgccg        
                     ggcgtatggtcaattaaccttggttgaccaaggatcattcaa        
                     ccctgccccccggggcggggggcgcacccctcggggggcatt        


SPP00000035_1.0  125                           RKMAEAVQNHVKSLNWGHRVQLQ 
                                               R+MAEAVQNHVKSLNWGHRVQLQ 
                                W:W[tgg]       RRMAEAVQNHVKSLNWGHRVQLQ 
gi|398920536|gb50550 TGGTGAGGA  Intron 3   CAGGaaaggggcacgatcatgccgccc 
                       <2-----[50552:51149]-2> ggtcactaaatactaggagtata 
                                               gagaattaccgacgcggcgcggg 


SPP00000035_1.0  149 D                          KVKYFNIKASFVDEHTVCGVAK 
                     D                          KVKYFNIKASFV+EHTV GV K 
                     D           R:R[aga]       KVKYFNIKASFVNEHTVRGVTK 
gi|398920536|gb51220 gAGGTGCTGA  Intron 4   CAGAagattaaagatgagcagcggaa 
                     a  <2-----[51225:53050]-2> ataatatacgttaaactggtca 
                     c                          acgctccgcccctacgcctcga 


SPP00000035_1.0  173 GGKE                       ILLSADHIIIATGGRPRYPTH  
                      GKE                        LLSA+HI+IATGGRPRYP +  
                     DGKE                       TLLSAEHIVIATGGRPRYPMN  
gi|398920536|gb53118 ggagGTGAGAG  Intron 5   CAGacctggcagagaggccatcaa  
                     agaa<0-----[53130:53601]-0>cttccaatttccgggcgacta  
                     cgag                       tgtgtgccccataggggccgc  


SPP00000035_1.0  198                        IEGALEYGITSDDIFWLKESPGK    
                                            IEGALEYGITSDDIFWLKESPGK    
                                            IEGALEYGITSDDIFWLKESPGK    
gi|398920536|gb53665 GTGAGTG  Intron 6   TAGagggtgtgaaaggattcagtcga    
                     <0-----[53665:59511]-0>tagctaagtcgaattgtaaccga    
                                            catcgatatattcccgggactaa    


SPP00000035_1.0  221                           LVVGAS                  
                                               LVVGAS                  
                                T:T[acg]       LVVGAS                  
gi|398920536|gb59581 ACGTAAGAC  Intron 7   CAGGtgggga                  
                       <2-----[59583:67960]-2> tttgcg                  
                                               ggcgcc                  


SPP00000035_1.0  228                           VALECAGFLTGIGLDTTIMMRSI 
                                               VALECAGFLTG+GLDTT+MMRSI 
                               Y:Y[tac]        VALECAGFLTGLGLDTTVMMRSI 
gi|398920536|gb67980 TGTATCCT  Intron 8   CAGACggcgtggtcagcgcgaagaacaa 
                      <1-----[67981:68773]-1>  tctagcgttcgtgtacctttggt 
                                               gcggtcccccggagccccggccc 


SPP00000035_1.0  252 PLRGFDQ                       QMSSMVIEHMASHGTRFLR 
                     PLRGFDQ                       QMSS+V E+MASHGT+FLR 
                     PLRGFDQ                       QMSSLVTEYMASHGTQFLR 
gi|398920536|gb68845 cccgtgcGTAGTGC  Intron 9   CAGcatttgagtagtcgactca 
                     ctggtaa<0-----[68866:71179]-0>atccttcaatccagcattg 
                     ccgctcg                       agtcgctgcgatcccgcgg 


SPP00000035_1.0  278 GCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAI           
                     GC PSRV RLPDGQLQVTWED T+GK+D GTFDTVLWAI           
                     GCTPSRVGRLPDGQLQVTWEDLTSGKKDMGTFDTVLWAI           
gi|398920536|gb71237 gtactaggaccggcccgatggcatgaagagatgagctga           
                     ggcccgtggtcagatatcgaatccgaaatgctacttgct           
                     cccccagggcgtcgcgccggccctcggcggctctcggca           


SPP00000035_1.0  317                           RVPDTRSLNLEKAGVDTSPDTQK 
                                               RVP+TRSL+LE AGV+T+P++QK 
                               G:G[ggt]        RVPETRSLDLENAGVNTNPNSQK 
gi|398920536|gb71354 GGTAAGGG  Intron 10  CAGGTcgcgaaacgtgagggaaacaaca 
                      <1-----[71355:81055]-1>  gtcacggtataacgtacacagaa 
                                               ataacatatggttagtcccctgg 


SPP00000035_1.0  341 ILVDSREATSVPHIYAIGDVVE                       GRPE 
                     ILVD++EATSVP+IYAIGDV E                       GRPE 
                     ILVDAQEATSVPNIYAIGDVAE                       GRPE 
gi|398920536|gb81127 acgggcggatgcaatgagggggGTAAGGC  Intron 11  CAGgccg 
                     tttacaaccctcatactgatca<0-----[81193:84394]-0>ggca 
                     cgtccgacctcccccccacaag                       gggg 


SPP00000035_1.0  367 LTPIAIMAGRLLVQRLFGGSSDLMDYDN                      
                     LTP AIMAGRLL QRL G SSDLMDYDN                      
                     LTPPAIMAGRLLAQRLCGQSSDLMDYDN                      
gi|398920536|gb84407 caccgaaggactgccctgcttgcagtgaGTGAGTG  Intron 12    
                     tccccttcggttcagtggaccattaaaa<0-----[84491:84783]  
                     ggcggcggggcgcgggctgcacggctcc                      


SPP00000035_1.0  395    VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE                
                        VPTTVFTPLEYGCVGLSEEEAVARHG+EHVE                
                        VPTTVFTPLEYGCVGLSEEEAVARHGEEHVE                
gi|398920536|gb84781 CAGgcaagtaccgtgtggctggggggccgggcgg                
                     -0>tcccttcctaaggtgtcaaactcgagaaata                
                        ccaaccctgatctgggagggcggccagacgg                


SPP00000035_1.0  426                        VYHAHYKPLEFTVAGRDASQCYVK   
                                            VYHA+YKPLEF VA RDASQCY+K   
                                            VYHAYYKPLEFMVAERDASQCYIK   
gi|398920536|gb84877 GTAAGTC  Intron 13  CAGgtcgttaccgtagggcggtcttaa   
                     <0-----[84877:86463]-0>taacaaactatttcagaccagata   
                                            ttcattaaggcgatagtgcgtcag   


SPP00000035_1.0  450                        MVCLREPPQLVLGLHFLGPNAGEVTQ 
                                            MVCLREPPQLVLGLHFLGPNAGEVTQ 
                                            MVCLREPPQLVLGLHFLGPNAGEVTQ 
gi|398920536|gb86536 GTGAGTG  Intron 14  CAGagtccgccccgcgcctcgcaggggac 
                     <0-----[86536:86708]-0>ttgtgaccatttgtattgcacgatca 
                                            ggcgggcaggggcgccccctacatta 


SPP00000035_1.0  476 GFALGI                          CGASYAQVMRTVGIHPT 
                     GFALGI                          CG SYAQVMRTVGIHPT 
                     GFALGI           K:K[aag]       CGVSYAQVMRTVGIHPT 
gi|398920536|gb86787 gtgcgaAAGTAAGTC  Intron 15  CAGGtggttgcgacaggacca 
                     gtctgt  <2-----[86807:88635]-2> ggtcacattgctgtacc 
                     attggc                          tgcctgggggagcccgc 


SPP00000035_1.0  500 CSEEVVKLRISKRSGLDPTVTGC                           
                     C+EEV KLRISKRSGLDPTVTGC                           
                     CAEEVAKLRISKRSGLDPTVTGC                           
gi|398920536|gb88688 tgggggaccatactgcgcagagt                           
                     gcaatcatgtcagcgtacctcgg                           
                     tcgggcggcccgcacgccggacc                           


//
Making a A in phase 1 intron
Making a G in phase 1 intron
Making a W in phase 2 intron
Making a R in phase 2 intron
Making a T in phase 2 intron
Making a Y in phase 1 intron
Making a G in phase 1 intron
Making a K in phase 2 intron
>gi|398920536|gb|JH767848.1|:subseq(401026,138762).pep
AGRQDYDLLVIGGGSGGLACAKEAAQLGKKVALVDYVEPSPRGTRWGLGGTCVNVGCIPK
KLMHQAALLGGMIRDAPHYGWEVAQLVPHDWRRMAEAVQNHVKSLNWGHRVQLQDRKVKY
FNIKASFVNEHTVRGVTKDGKETLLSAEHIVIATGGRPRYPMNIEGALEYGITSDDIFWL
KESPGKTLVVGASYVALECAGFLTGLGLDTTVMMRSIPLRGFDQQMSSLVTEYMASHGTQ
FLRGCTPSRVGRLPDGQLQVTWEDLTSGKKDMGTFDTVLWAIGRVPETRSLDLENAGVNT
NPNSQKILVDAQEATSVPNIYAIGDVAEGRPELTPPAIMAGRLLAQRLCGQSSDLMDYDN
VPTTVFTPLEYGCVGLSEEEAVARHGEEHVEVYHAYYKPLEFMVAERDASQCYIKMVCLR
EPPQLVLGLHFLGPNAGEVTQGFALGIKCGVSYAQVMRTVGIHPTCAEEVAKLRISKRSG
LDPTVTGC
//
