
genewise output
Score 515.26 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001600_2.0    1 IPAGYCFVEFADLATAEKCLHKINGKPLPGATP                 
                     IPAGYCFVEFADLATAEKCLHKINGKPLPGATP                 
                     IPAGYCFVEFADLATAEKCLHKINGKPLPGATP                 
gi|398923877|gb50000 acggtttggtggtgaggattcaaagacccggac                 
                     tccgagttatcatcccaagtaatagactcgccc                 
                     catccctaacatgcatggtgtattgactaacat                 


SPP00001600_2.0   34                        AKRFKLNYATYGKQPDN          
                                            AKRFKLNYATYGKQPDN          
                                            AKRFKLNYATYGKQPDN          
gi|398923877|gb50099 GTAAGGA  Intron 1   CAGgactatatgatgaccga          
                     <0-----[50099:50720]-0>cagtataaccagaacaa          
                                            aattagctcttgaaatc          


SPP00001600_2.0   51                           PEYSLFVGDLTPDVDDGMLYEFF 
                                               PEYSLFVGDLTPDVDDGMLYEFF 
                                S:S[agc]       PEYSLFVGDLTPDVDDGMLYEFF 
gi|398923877|gb50772 AGGTAAGTA  Intron 2   CAGCcgttctgggcacgggggactgtt 
                       <2-----[50774:52686]-2> caactttgatccataagttaatt 
                                               tgccctggcgcatgctcgctacc 


SPP00001600_2.0   75 VKVYPSCRGGKVVLDPTGVS                          GYG 
                     VKVYPSCRGGKVVLD TGVS                          GYG 
                     VKVYPSCRGGKVVLDQTGVS           K:K[aag]       GYG 
gi|398923877|gb52757 gagtcttcggaggtgcaggtAAGTAAGGC  Intron 3   CAGGgtg 
                     tataccggggatttaacgtc  <2-----[52819:53878]-2> gag 
                     cacccctgacgttgcgaaat                          ctt 


SPP00001600_2.0   99 FVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK              
                     FVKFTDELEQKRALTECQGAVGLG KPVRLSVAIPK              
                     FVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK              
gi|398923877|gb53889 tgataggcgcacgcagtcggggcgtacgccaggaca              
                     ttatcaataaagctcagagctgtgcactgtgtctca              
                     tgacataaaggacgggcgaaaaagtaagggcgacta              


SPP00001600_2.0  135                           SRVKPVEYSQMYSYSYNQYYQQY 
                                               SRVKPVEYSQMYSYSYNQYYQQY 
                                A:A[gcg]       SRVKPVEYSQMYSYSYNQYYQQY 
gi|398923877|gb53997 GCGTGAGTC  Intron 4   AAGGacgacggtacatatatacttcct 
                       <2-----[53999:57576]-2> ggtactaagatagagaaaaaaaa 
                                               ttggagattggctccccgtcggc 


SPP00001600_2.0  159 QNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ                   
                     QNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ                   
                     QNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ                   
gi|398923877|gb57647 cattgctgtgcaagatatatcctgtacaaac                   
                     aaaacaggaaaacggagagacaagacagcta                   
                     gcctcggctcgcacccccttcgtctcgccgg                   


SPP00001600_2.0  190                        TYEEVGDDALE                
                                            TYEEVGDDALE                
                                            TYEEVGDDALE                
gi|398923877|gb57740 GTAACCG  Intron 5   CAGatgggggggtg                
                     <0-----[57740:58220]-0>caaatgaacta                
                                            ataatattaga                


SPP00001600_2.0  201                           PAPQLDVTEANKEFMEQSEELYD 
                                               P PQLDVTEANKEFMEQSEELYD 
                               D:D[gac]        PMPQLDVTEANKEFMEQSEELYD 
gi|398923877|gb58254 GGTAAGAA  Intron 6   CAGACcacccggaggaagtagcaggctg 
                      <1-----[58255:64609]-1>  ctcatatcacaaattaagaataa 
                                               gggggtgtaccggcgggcgggct 


SPP00001600_2.0  225 ALMDCHWQPLDTVSSEIPAMM                             
                     ALM+CHWQPLDTVSSEIPAMM                             
                     ALMECHWQPLDTVSSEIPAMM                             
gi|398923877|gb64681 gcagtctcccgagttgacgaa                             
                     cttagagactactccatcctt                             
                     aggattggcgcagtagcccgg                             


//
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a A in phase 2 intron
Making a D in phase 1 intron
>gi|398923877|gb|JH767739.1|:subseq(22142781,100000).pep
IPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGD
LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVG
LGSKPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQ
YGYTQSTMQTYEEVGDDALEDPMPQLDVTEANKEFMEQSEELYDALMECHWQPLDTVSSE
IPAMM
//
