
genewise output
Score 845.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000061_2.0    1 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH 
                     MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH 
                     MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH 
gi|398923956|gb50000 atacgttacgatgtgaatccaatagcagagtagccggccatcgttcgac 
                     tccgactacagaataagtgtcgtcatagcggatcaattaattactaaaa 
                     gtgggctcgattagcgccgacactaggctccggcatcggagggcaggcc 


SPP00000061_2.0   50 FQEDEQFLGAVMPRL                          IGMDTCVI 
                     FQEDEQFLGAVMPRL                          IGMDTCVI 
                     FQEDEQFLGAVMPRL          G:G[ggc]        IGMDTCVI 
gi|398923956|gb50147 tcgggctcgggacacGGTATGTG  Intron 1   CAGGCagagatga 
                     taaaaattgcttcgt <1-----[50193:55079]-1>  tgtacgtt 
                     caatagtgaacgagc                          tagtttct 


SPP00000061_2.0   74 PLRHGGLSLVQTTDYIYPIVDDPYMM                        
                     PLRHGGLSLVQTTDYIYPIVDDPYMM                        
                     PLRHGGLSLVQTTDYIYPIVDDPYMM                        
gi|398923956|gb55106 ctacggcttgcaagtatcagggctaaGTAAGTT  Intron 2   CAG 
                     ctgaggtcttaccaatacttaacatt<0-----[55184:57183]-0> 
                     tggtcttcgtacgtctcccctctcgg                        


SPP00000061_2.0  100 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR              
                     GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR              
                     GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR              
gi|398923956|gb57184 gaagtgagcagctgaggagtgaacaccggaaaaaga              
                     ggtcgcattgatactgtcagaatttttgtgaatcag              
                     cgaatctcctccccggcaatctgggctacttagccg              


SPP00000061_2.0  136                        ERDKVMPLIIQGFKDAAEEAGTSVTG 
                                            ERDKVMPLIIQGFKDAAEEAGTSVTG 
                                            ERDKVMPLIIQGFKDAAEEAGTSVTG 
gi|398923956|gb57292 GTAAGTG  Intron 3   TAGgagagaccaacgtagggggggatgag 
                     <0-----[57292:58207]-0>agaattctttagtaaccaacgcctcg 
                                            agtaggcatagttataaggacataac 


SPP00000061_2.0  162 GQTVLNPWIVLGGVATTVCQPNEFI                         
                     GQTVLNPWIVLGGVATTVCQPNEFI                         
                     GQTVLNPWIVLGGVATTVCQPNEFI           M:M[atg]      
gi|398923956|gb58286 gcagtactagtggggaagtccagtaATGTAAGTG  Intron 4      
                     gacttacgtttggtccctgacaatt  <2-----[58363:61452]   
                     caagaccgttgaagtgtccgctgtc                         


SPP00000061_2.0  187     PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI                
                         PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI                
                         PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI                
gi|398923956|gb61450 CAGGcgaggcgggcgcaaccgacgggggcctcga                
                     -2> caactcgattttcactgcatctctaagtat                
                         atcagagtggggggcggaagcgcgcgggtt                


SPP00000061_2.0  218                        PEKWNKIKLVVTQEDVELAYQEAMMN 
                                            PEKWNKIKLVVTQEDVELAYQEAMMN 
                                            PEKWNKIKLVVTQEDVELAYQEAMMN 
gi|398923956|gb61544 GTGAGTG  Intron 5   TAGcgataaaacggacggggtgtcggaaa 
                     <0-----[61544:63982]-0>caagaatatttcaaatatcaaactta 
                                            taggcatacgccaatggggcgggggc 


SPP00000061_2.0  244 MARLNRT                          AGLMHTFNAHAATDIT 
                     MARLNRT                          AGLMHTFNAHAATDIT 
                     MARLNRT          A:A[gct]        AGLMHTFNAHAATDIT 
gi|398923956|gb64061 agacaaaGGTACTGG  Intron 6   TAGCTggcacatagcggagaa 
                     tcgtagc <1-----[64083:71696]-1>  cgttactacacccatc 
                     gggccaa                          aacgcactccccgccg 


SPP00000061_2.0  268 GFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGT 
                     GFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGT 
                     GFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGT 
gi|398923956|gb71747 gtgatgcgcacgaccaaggttgacaccgcgaagggaagtgaatgcacga 
                     gtgttgacaatcaaagaatctttaatcttcatcctgacggattgttagc 
                     ctatgcctgcgcgaggcggctgtccttcgcggttgcgctacgtccgcgc 


SPP00000061_2.0  317 CPETS                          GLLICLPREQAARFCAEI 
                     CPETS                          GLLICLPREQAARFCAEI 
                     CPETS          G:G[gga]        GLLICLPREQAARFCAEI 
gi|398923956|gb71894 tcgatGGTACGAG  Intron 7   CAGGAgccattccgcggcttgga 
                     gcacc <1-----[71910:73580]-1>  gtttgtcgaaccgtgcat 
                     cggaa                          ctactaatgaatgctagc 


SPP00000061_2.0  341 KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPG 
                     KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQ+VNPTPG 
                     KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQSVNPTPG 
gi|398923956|gb73637 atcatgggccgtaagaggagacagaaagaccaagggccggacagacacg 
                     accaagagaacgttgttaagagccgttaacgttatccatccagtacccg 
                     gcaattatcacgttgcaggccggcgcacacgccaccaagctgtgtcacg 


SPP00000061_2.0  390 ATS                                               
                     ATS                                               
                     ATS                                               
gi|398923956|gb73784 gat                                               
                     ccc                                               
                     ccg                                               


//
Making a G in phase 1 intron
Making a M in phase 2 intron
Making a A in phase 1 intron
Making a G in phase 1 intron
>gi|398923956|gb|JH767738.1|:subseq(20784639,226256).pep
MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV
MPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECD
NMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVC
QPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEA
MMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMA
AVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKG
NRTARIIDKPRIIEVAPQVATQSVNPTPGATS
//
