
genewise output
Score 497.72 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000849_2.0    1 MGLPRAGLWLKRLWVLLQVALQVAVGKVLLTLFPDRVKQHIVAMNQKNP 
                     MGLP AGLWL+RLWVLLQVALQVAVGKVLL LFP+RVK+HIVAMNQKNP 
                     MGLPWAGLWLRRLWVLLQVALQVAVGKVLLILFPERVKKHIVAMNQKNP 
gi|398921711|gb50000 agcctggctcaactgcccggccggggagccactcgagaacaggaacaac 
                     tgtcgcgtgtggtgtttatctatctgattttttcagtaaattctaaaac 
                     gggcgcggggggcggcgggtgagtgcagagacttgacggccgcgcggcc 


SPP00000849_2.0   50 HFSYDNWVPTLYSTQYFWFVLKVHWQRLEDTTKRGGLAPNSPVVRLSGQ 
                     HFSYDNW PTLYSTQYF F+LKVHWQRLEDTTKRGGLAPNSPVVRLSGQ 
                     HFSYDNWAPTLYSTQYFRFILKVHWQRLEDTTKRGGLAPNSPVVRLSGQ 
gi|398921711|gb50147 ctttgatgcactaacttctacagctcccggaaacggcgcaacggcctgc 
                     atcaaagccctagcaatgtttatagagtaaccagggtccagcttgtcga 
                     ccctccgcgcccccgtcgccggccggaagcgtgagtgcacccgcccaag 


SPP00000849_2.0   99 RCNIWDFMQ                          NRPLVLNFGSCTXP 
                     RCNIWDFMQ                          NRPLVLNFGSCTXP 
                     RCNIWDFMQ          G:G[ggc]        NRPLVLNFGSCTXP 
gi|398921711|gb50294 ataatgtacGGTCAGGA  Intron 1   TAGGCaactgcatgatatc 
                     ggatgatta <1-----[50322:57971]-1>  agctttatgggcgc 
                     gcccgccga                          cgagggtcattcat 


SPP00000849_2.0  123 SFLFKFDQFKRLIEDFSSIADFLIIYIEEAHAS                 
                     SFLFKFDQFKRLIEDF+SIADFLIIYIEEAHAS                 
                     SFLFKFDQFKRLIEDFTSIADFLIIYIEEAHAS                 
gi|398921711|gb58016 ttctatgctaacaggtataggtcaatagggcgt                 
                     ctttataatagttaatcctcattttataacacc                 
                     gttcatcacgattacttccgttccccaaaacaa                 


SPP00000849_2.0  156                           GWAFKNNVVIRNHRNLQDRLRAA 
                                               GWAFKNNVVIRNHRNLQDRLRAA 
                               D:D[gat]        GWAFKNNVVIRNHRNLQDRLRAA 
gi|398921711|gb58115 GGTAAAGA  Intron 2   TAGATgtgtaaaggaaaccaccgcccgg 
                      <1-----[58116:63148]-1>  ggctaaatttgaagataagtgcc 
                                               cgttgccgccgtcgtcgccggac 


SPP00000849_2.0  180 RLLLDRSPPCPVVVDSMENRSSQLYAALPDRLYVLQARRILYK       
                     RLLLDRSP CPVVVD+M+N+SSQLYAALP+RLYVL+  RILYK       
                     RLLLDRSPQCPVVVDTMKNQSSQLYAALPERLYVLREGRILYK       
gi|398921711|gb63220 ccccgaacctcggggaaaacaacctggccgactgccggaacta       
                     gtttaggcagctttactaaaggatacctcagtattgaggttaa       
                     cgggcgccgcggggcgggcgccgccgagcggctgcggcgcccg       


SPP00000849_2.0  223                        GKPGPWNYHPEEVRAVLEKLHS     
                                            GKPGPWNYHPEEVRAVLEKLHS     
                                            GKPGPWNYHPEEVRAVLEKLHS     
gi|398921711|gb63349 GTGGTGA  Intron 3   CAGgacgctatccgggcggcgacca     
                     <0-----[63349:65366]-0>gacgcgaaacaatgcttaatag     
                                            tatctgcctagactttgagcct     


//
Making a G in phase 1 intron
Making a D in phase 1 intron
>gi|398921711|gb|JH767796.1|:subseq(6226177,115432).pep
MGLPWAGLWLRRLWVLLQVALQVAVGKVLLILFPERVKKHIVAMNQKNPHFSYDNWAPTL
YSTQYFRFILKVHWQRLEDTTKRGGLAPNSPVVRLSGQRCNIWDFMQGNRPLVLNFGSCT
XPSFLFKFDQFKRLIEDFTSIADFLIIYIEEAHASDGWAFKNNVVIRNHRNLQDRLRAAR
LLLDRSPQCPVVVDTMKNQSSQLYAALPERLYVLREGRILYKGKPGPWNYHPEEVRAVLE
KLHS
//
