
genewise output
Score 593.50 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000146_2.0    1 MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
gi|398923877|gb49483 aggactaggGTGAGTG  Intron 1   CAGcgctaggatatagtgaa 
                     tccgtgtga<0-----[49510:50020]-0>tacataaattcgctcct 
                     ggccgggcc                       ggccgtgccccactccg 


SPP00000146_2.0   27 GETVMSVKIIRNRLT                          IPAGYCFV 
                     GETVMSVKIIRNRLT                          IPAGYCFV 
                     GETVMSVKIIRNRLT           G:G[ggg]       IPAGYCFV 
gi|398923877|gb50072 ggagaagaaacaccaGGGTACGTT  Intron 2   CAGGacggtttg 
                     gacttgtattgagtc  <2-----[50119:56137]-2> tccgagtt 
                     ggcggctatcaccct                          catcccta 


SPP00000146_2.0   51 EFADLATAEKCLHKINGKPLPGATP                       A 
                     EFADLATAEKCLHKINGKPLPGATP                       A 
                     EFADLATAEKCLHKINGKPLPGATP                       A 
gi|398923877|gb56163 gtggtgaggattcaaagacccggacGTAAGGA  Intron 3   CAGg 
                     atcatcccaagtaatagactcgccc<0-----[56238:56859]-0>c 
                     acatgcatggtgtattgactaacat                       a 


SPP00000146_2.0   77 KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN           S:S[agc]       PEYSLFV 
gi|398923877|gb56863 actatatgatgaccgaAGGTAAGTA  Intron 4   CAGCcgttctg 
                     agtataaccagaacaa  <2-----[56913:58825]-2> caacttt 
                     attagctcttgaaatc                          tgccctg 


SPP00000146_2.0  101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
                     GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
                     GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
gi|398923877|gb58848 ggcacgggggactgttgagtcttcggaggtgcaggt              
                     gatccataagttaatttataccggggatttaacgtc              
                     gcgcatgctcgctacccacccctgacgttgcgaaat              


SPP00000146_2.0  137                           GYGFVKFTDELEQKRALTECQGA 
                                               GYGFVKFTDELEQKRALTECQGA 
                                K:K[aag]       GYGFVKFTDELEQKRALTECQGA 
gi|398923877|gb58956 AAGTAAGGC  Intron 5   CAGGgtgtgataggcgcacgcagtcgg 
                       <2-----[58958:60017]-2> gagttatcaataaagctcagagc 
                                               ctttgacataaaggacgggcgaa 


SPP00000146_2.0  161 VGLGSKPVRLSVAIPK                          SRVKPVE 
                     VGLGSKPVRLSVAIPK                          SRVKPVE 
                     VGLGSKPVRLSVAIPK           A:A[gcg]       SRVKPVE 
gi|398923877|gb60088 ggcgtacgccaggacaGCGTGAGTC  Intron 6   AAGGacgacgg 
                     tgtgcactgtgtctca  <2-----[60138:63715]-2> ggtacta 
                     aaagtaagggcgacta                          ttggaga 


SPP00000146_2.0  185 YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
                     YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
                     YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
gi|398923877|gb63738 tacatatatacttcctcattgctgtgcaagatatatcctgtacaaac   
                     agatagagaaaaaaaaaaaacaggaaaacggagagacaagacagcta   
                     ttggctccccgtcggcgcctcggctcgcacccccttcgtctcgccgg   


SPP00000146_2.0  232                        TYEEVGDDALE                
                                            TYEEVGDDALE                
                                            TYEEVGDDALE                
gi|398923877|gb63879 GTAACCG  Intron 7   CAGatgggggggtg                
                     <0-----[63879:64359]-0>caaatgaacta                
                                            ataatattaga                


SPP00000146_2.0  243                           PMPQLDVTEANKEFMEQSEELYD 
                                               PMPQLDVTEANKEFMEQSEELYD 
                               D:D[gac]        PMPQLDVTEANKEFMEQSEELYD 
gi|398923877|gb64393 GGTAAGAA  Intron 8   CAGACcacccggaggaagtagcaggctg 
                      <1-----[64394:70748]-1>  ctcatatcacaaattaagaataa 
                                               gggggtgtaccggcgggcgggct 


SPP00000146_2.0  267 ALMDCHWQPLDTVSSEIPAMM                             
                     ALM+CHWQPLDTVSSEIPAMM                             
                     ALMECHWQPLDTVSSEIPAMM                             
gi|398923877|gb70820 gcagtctcccgagttgacgaa                             
                     cttagagactactccatcctt                             
                     aggattggcgcagtagcccgg                             


//
Making a G in phase 2 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a A in phase 2 intron
Making a D in phase 1 intron
>gi|398923877|gb|JH767739.1|:subseq(22136642,9503299).pep
MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK
CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV
KPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDA
LEDPMPQLDVTEANKEFMEQSEELYDALMECHWQPLDTVSSEIPAMM
//
