
genewise output
Score 331.05 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000116_2.0   23 EPGLAAAAMSTVDLARVGACILKHAVTGE                     
                     EPG  AAAMSTVDLARVGAC+LKHAVTGE                     
                     EPG-TAAAMSTVDLARVGACVLKHAVTGE                     
gi|398923877|gb50000 gcg agggaaaggcgcgggtgcacggaggGTGAGGC  Intron 1    
                     acg cccctgctatcgtgcgttaactcga<0-----[50084:50510] 
                     ggg gggcgccgctccgcgtcggcggcgg                     


SPP00000116_2.0   52    AVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVR 
                        AVEL SLW+E  CVVAGLRRFGC+VCRWIA+DLSSL GLLDQHGVR 
                        AVELWSLWQEQTCVVAGLRRFGCMVCRWIARDLSSLKGLLDQHGVR 
gi|398923877|gb50508 CAGgggctactcgcatggggccctgtagtctagcgcaacagccgccggc 
                     -0>ctatggtgaaacgttcgtggtggttgggtcgatggtagttaaagtg 
                        cggggcgggggacggccggccccggtcgccgcccccggcgcgccgc 


SPP00000116_2.0   98 LVGVGPEALGLQEFLDGDYFAG                          L 
                     LVGVGPEALGLQEFLDG YF+G                          L 
                     LVGVGPEALGLQEFLDGGYFSG          E:E[gag]        L 
gi|398923877|gb50649 tggggcggcgccgtcgggtttgGGTGCCTG  Intron 2   CAGAGc 
                     ttgtgcactgtaattaggatcg <1-----[50716:51400]-1>  t 
                     ggcagcgcgcgggcgcccccga                          g 


SPP00000116_2.0  122 YLDESKQLYKELGFK                          YNSLSILP 
                     YLDESKQ YKELGFK                          YNSLSILP 
                     YLDESKQFYKELGFK           R:R[cgg]       YNSLSILP 
gi|398923877|gb51406 tcggaacttagcgtaCGGTGGGTG  Intron 3   TAGGtaataacc 
                     ataagaataaatgta  <2-----[51453:52035]-2> aagtgttc 
                     tgcgcggccaggccg                          cctgccgg 


SPP00000116_2.0  146 AALGKPVRDVAAK                       AKAVGIQGNLSGD 
                     AALGKPVRDVAAK                       AKA+GIQGNLSGD 
                     AALGKPVRDVAAK                       AKALGIQGNLSGD 
gi|398923877|gb52061 ggcgacgcggggaGTTTGTG  Intron 4   CAGgagcgacgactgg 
                     cctgactgatcca<0-----[52100:52195]-0>cactgtagatcga 
                     ccgggcgttgtcg                       cgttccagcgtac 


SPP00000116_2.0  172 LLQSGGLLVVSK                          GDKVLLHFVQK 
                     LLQSGGLLV++K                          GDKVLLHFVQK 
                     LLQSGGLLVIAK          G:G[ggt]        GDKVLLHFVQK 
gi|398923877|gb52235 cccaggccgagaGGTGGGCT  Intron 5   CAGGTggagccctgca 
                     ttagggttttca <1-----[52272:52558]-1>  gaatttattaa 
                     gggtaggggcca                          tcaggacctgg 


SPP00000116_2.0  196 SPGDYVPKEHILQVLGISAEVCASDPPQ                      
                     SPGDYVP+E ILQ LGIS EV AS PPQ                      
                     SPGDYVPQESILQALGISVEVRASAPPQ                      
gi|398923877|gb52594 tcggtgccgaaccgcgatgggagagccc                      
                     ccgaatcaagttactgtctatgcgccca                      
                     cgcccccggccggcgcccggcgctggcg                      


//
Making a E in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>gi|398923877|gb|JH767739.1|:subseq(1454325,102677).pep
EPGTAAAMSTVDLARVGACVLKHAVTGEAVELWSLWQEQTCVVAGLRRFGCMVCRWIARD
LSSLKGLLDQHGVRLVGVGPEALGLQEFLDGGYFSGELYLDESKQFYKELGFKRYNSLSI
LPAALGKPVRDVAAKAKALGIQGNLSGDLLQSGGLLVIAKGGDKVLLHFVQKSPGDYVPQ
ESILQALGISVEVRASAPPQ
//
