
genewise output
Score 417.69 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000011_1.0    1 MEPLAAYPLKCSGPRAKVFAVLLSIVLCTVTLFLLQLKFLKPKINSFYA 
                     MEPL AY L+CSGP+AKVFAVLLS++LCTV LFLLQLKFLKPKINSFY  
                     MEPLTAYSLRCSGPKAKVFAVLLSMILCTVMLFLLQLKFLKPKINSFYT 
gi|398924304|gb50000 agccagtttattgcagagtggtctaactagactccctatcacaaaatta 
                     tactccactggcgcacattctttctttgcttttttatattacatagtac 
                     ggttgtcgaatagcaagatatggtgtacaagattaaaataatacccttc 


SPP00000011_1.0   50 FEVKDAKGRTVSLEKYKGK                       VSLVVNV 
                     FEVKDAKGR VSLEK+KGK                       V+LVVNV 
                     FEVKDAKGRMVSLEKFKGK                       VALVVNV 
gi|398924304|gb50147 tggaggagaagtcgatagaGTAAGTC  Intron 1   GAGggcggag 
                     tataacaggttctaataga<0-----[50204:50731]-0>tctttat 
                     tagataaaagttgagtaca                       taatacg 


SPP00000011_1.0   76 ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 
                     ASDCQLTDRNYL L+ELHKEFGP HFSVLAFPCNQFGESEPRPS EV S 
                     ASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSNEVVS 
gi|398924304|gb50753 gagtccagaattgccgccagtgctctagtgtctactggtgcccaagggt 
                     cgagatcagaatctaataaatgctatgttctcgaatgacacgcgaattc 
                     ttccacacatcaaggagcagtaacccccgttactgtaaggccaccaaat 


SPP00000011_1.0  125 FARKNYGVTFPIFHKIKILGSEGEPAFRFLV                   
                     FAR NYGVTFPIFHKIKILGS  EPAFRFLV                   
                     FARNNYGVTFPIFHKIKILGSGAEPAFRFLV                   
gi|398924304|gb50900 tgaaatggatcatcaaaacgtgggcgtatcg                   
                     tcgaaagtctcttaatattgcgcacctgttt                   
                     taatccaaacccccgtgtaataagtatattt                   


SPP00000011_1.0  156                           SSKKEPRWNFWKYLVNPEGQVVK 
                                               SSKKEPRWNFWKYLVNPEGQVVK 
                               D:D[gat]        SSKKEPRWNFWKYLVNPEGQVVK 
gi|398924304|gb50993 GGTAAATA  Intron 2   CAGATttaagcatattatcgacggcgga 
                      <1-----[50994:54364]-1>  ccaaacggatgaattacagatta 
                                               taggaaggttggtgcctgtatgg 


SPP00000011_1.0  180 FWKPEEPIEVIRPDIAALVRQVIIKKKEDL                    
                     FW+PEEPI+VIRP+IA L+RQ+IIKKKEDL                    
                     FWRPEEPIDVIRPEIADLIRQMIIKKKEDL                    
gi|398924304|gb54436 ttacggcaggaacgaggcaacaaaaaaggc                    
                     tggcaactattgcatcattgatttaaaaat                    
                     cggaggctcccgtgaatgtaagcaagagta                    


//
Making a D in phase 1 intron
>gi|398924304|gb|JH767731.1|:subseq(29220945,104525).pep
MEPLTAYSLRCSGPKAKVFAVLLSMILCTVMLFLLQLKFLKPKINSFYTFEVKDAKGRMV
SLEKFKGKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSN
EVVSFARNNYGVTFPIFHKIKILGSGAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF
WRPEEPIDVIRPEIADLIRQMIIKKKEDL
//
