
genewise output
Score 332.77 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000036_2.0   10 LLPLLLACFVQTSPKQEKMK                       MDCHKD 
                     L PL +  F Q +P+ +KMK                       MDC+K  
                     LFPLFVVGFAQLTPESQKMK                       MDCYKG 
gi|398920810|gb79038 ctcctgggtgccacgtcaaaGTGAGTG  Intron 1   CAGagttag 
                     ttcttttgtcatccacaata<0-----[79098:82518]-0>tagaag 
                     tcggcgccttggcagaaggg                       gtctgg 


SPP00000036_2.0   36 EKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQYP     
                       GTIY+Y A+ LN  EY+ FKQY GKH+LF+NVATY GLTAQYP     
                     VTGTIYEYGALTLNGEEYIQFKQYAGKHVLFINVATYXGLTAQYP     
gi|398920810|gb82537 gagaatgtggcacagggtactactggacgctaaggattgtagctc     
                     tcgctaaagctctagaaatataaacgaattttatccaggtccaac     
                     gaccctgtacccctcggtcgcggtgcgccctctgcctacgatgtt     


SPP00000036_2.0   81                           LNALQEELKPYGLVVLGFPCNQF 
                                               LNALQEELKP+G+V+LGFPCNQF 
                               E:E[gaa]        LNALQEELKPFGVVLLGFPCNQF 
gi|398920810|gb82672 GGTAAGAA  Intron 2   CAGAAcagccggcactgggttgtctact 
                      <1-----[82673:87112]-1>  tactaaatactgttttgtcgaat 
                                               gtaagggggtttatggctcccgt 


SPP00000036_2.0  105 GKQEPGDNKEILPGL                          YVRPGGGF 
                     GKQEPG N EIL GL                          YVRPGGGF 
                     GKQEPGKNSEILFGL           K:K[aag]       YVRPGGGF 
gi|398920810|gb87184 gacgcgaatgactgcAAGTAAGTG  Intron 3   CAGGtgccgggt 
                     gaaacgaacatttgt  <2-----[87231:87717]-2> atgcgggt 
                     aaaaaaacagcttgc                          tgtattct 


SPP00000036_2.0  129 VPSFQLFEKGDVNGEKEQKVFSFLK                       H 
                     VP+FQLFEKGDVNGEKEQKVF+FLK                       + 
                     VPNFQLFEKGDVNGEKEQKVFTFLK                       N 
gi|398920810|gb87743 gcatcctgagggaggagcagtatcaGTAAGTC  Intron 4   CAGa 
                     tcatattaagatagaaaaattctta<0-----[87818:89302]-0>a 
                     ccctgctgagtgtaaaaggctccgg                       c 


SPP00000036_2.0  155 SCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRAT 
                     SCP  S++LG+   + W P+KVHDIRWNFEKFLVGPDG+PVMRW HRA+ 
                     SCPPTSDLLGSSNQLFWAPMKVHDIRWNFEKFLVGPDGVPVMRWFHRAS 
gi|398920810|gb89306 ttccatgctgttaccttgcaagcgactatgatcggcgggcgacttccgt 
                     cgccccattgccaattgcctataatggataatttgcagtcttggtagcc 
                     cctactttgcaacaccggcggctcccgctggcggattgctcgcgccgta 


SPP00000036_2.0  204 VSSVKTDILAYLKQFKTK                                
                     VS+VK+DIL YLKQFK++                                
                     VSTVKSDILEYLKQFKSE                                
gi|398920810|gb89453 gaagatgacgtcactatg                                
                     tgctacattaataataca                                
                     tcacgaccggcgggcaca                                


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|398920810|gb|JH767833.1|:subseq(2505861,100000).pep
LFPLFVVGFAQLTPESQKMKMDCYKGVTGTIYEYGALTLNGEEYIQFKQYAGKHVLFINV
ATYXGLTAQYPELNALQEELKPFGVVLLGFPCNQFGKQEPGKNSEILFGLKYVRPGGGFV
PNFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSNQLFWAPMKVHDIRWNFEKFLVG
PDGVPVMRWFHRASVSTVKSDILEYLKQFKSE
//
