
genewise output
Score 266.41 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000029_1.0    1 MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPV 
                     MNNQAR P PS ARTS SVRASTP RT  P+RT TPVRT T +R  TPV 
                     MNNQARAPVPSPARTSGSVRASTPVRTSIPVRTSTPVRTPTLVRASTPV 
gi|398920895|gb49484 aaacgagcgctcgcatgtgcgtacgaatacgcatacgcacacgcgtacg 
                     taaacgcctccccgccgctgcccctgcctctgcccctgcccttgcccct 
                     gccgggcacccgcgcgcgcgtgcgcgtgcgtgcgcccgcgtgcgcctcc 


SPP00000029_1.0   50 LTPSPAGTSPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVP 
                       P+P  T                PTP  A  P  V PP P   PTPV  
                     RPPTPVQT----------------PTPVRASTP--VWPPTPVRTPTPVG 
gi|398920895|gb49631 cccacgca                cacgcgtac  gtccacgcacacgg 
                     gcccctac                ccctgcccc  tgcccctgcccctg 
                     gcgctcga                gtgcgcact  cgcgtctgggtccg 


SPP00000029_1.0   99 TPVPVRNPTPVPTPARTLTPPVRVPAPAPAQLLAGIRAALPVLDSYLAP 
                     T  P R P   PTP  T T  VR+P P P         ++P  +S+    
                     TSTPNRTPVRTPTPVWTRT-LVRIPTPTP--------SSVPASESFSNS 
gi|398920895|gb49724 atacacacgcacacgtaca cgcacacac        ttgcgtgtttat 
                     ccccagcctgcccctgcgc ttgtccccc        cctcccactcac 
                     cgcccgcccgcgtgcgcgc gcgcacaca        cgctcgaccacc 


SPP00000029_1.0  148 ALPLDPPPEPAPELPLLPEEDPEPA-PSLKLIPSVSSEAGPAPGPLPTR 
                     A  LDPPPEPA E PL P +DP P  PS+K +PSV+   GP   PLP   
                     APSLDPPPEPAAEPPLSPNKDPAPTPPSVKHVPSVAKGFGPPQAPLPAL 
gi|398920895|gb49844 gcttgcccgcgggccttcaagcgcaccagacgctggagtgcccgcccgc 
                     ccctacccacccacctccaaaccccccgtaatcctcagtgccacctcct 
                     cgcgtgcaattggcaggccgctgcggatggcccggcgatgccggcttgc 


SPP00000029_1.0  196 TPLAANSPGPTLDFTFRADPSAIGLADPPIPSPVPSPILGTIPSAISLQ 
                      P A + PGP L    RADPS   L DPP P P+  PI+GT+PS   +  
                     PPSATDLPGPNLGSIPRADPSTTKLTDPP-PGPIV-PIVGTVPSTTPIS 
gi|398920895|gb49991 cctgagtcgcacgtacaggctaaatagcc cgcag caggagctaacat 
                     cccccatcgcatgctcgcaccccatcacc cgctt cttgctccccctc 
                     tagcttaggccggcccgatacccggatct taccg ccggccgccagtt 


SPP00000029_1.0  245 NCTETFPSSSENFALDKRVLIRVTY                         
                          + S+SENF +D ++ IRV Y                         
                     --PSPLASTSENFQVDSKITIRVIY           C:C[tgc]      
gi|398920895|gb50132   cactgtaagatcggaaaaacgatTGGTGAGGG  Intron 1      
                       cgctcccgaatatagatctgtta  <2-----[50203:51615]   
                       ccgaccccgctagccgcgtagcc                         


SPP00000029_1.0  270     GLXSYSLR                       YILLKKSLEQQFPN 
                             Y LR                       YILLKKSL+QQFPN 
                         ----YGLR                       YILLKKSLDQQFPN 
gi|398920895|gb51613 AAGC    tgccGTGAGTA  Intron 2   CAGtaccaaacgcctca 
                     -2>     agtg<0-----[51629:52538]-0>atttaagtaaatca 
                             cctg                       ttagagtgcgatat 


SPP00000029_1.0  293 HLLF                       EEDRAAQATGEFEVFVNGRLVH 
                      LLF                       E+D +AQA+GEFEVFV G LVH 
                     RLLF                       EQDISAQASGEFEVFVEGTLVH 
gi|398920895|gb52581 ccctGTGAGTG  Intron 3   CAGgcgatgcgtggtggtgggacgc 
                     gttt<0-----[52593:52711]-0>aaatccaccgatatttagctta 
                     tact                       ggcaccgtaggtagtgagagct 


SPP00000029_1.0  319 SKK                       RGDGFVNESRLQKIVSVIDEEIK 
                     SKK                       +GDGFV+E  L+KIVSVI+EEI+ 
                     SKK                       KGDGFVDEVSLRKIVSVINEEIR 
gi|398920895|gb52778 taaGTGATTC  Intron 4   CAGagggtggggaccaagagaaggaa 
                     caa<0-----[52787:52884]-0>agagttaatgtgattgttaaatg 
                     ggg                       gtcctgcgctggatgccccggcg 


SPP00000029_1.0  345 KR                                                
                     KR                                                
                     KR                                                
gi|398920895|gb52954 aa                                                
                     ag                                                
                     gg                                                


//
Making a C in phase 2 intron
>gi|398920895|gb|JH767830.1|:subseq(1533009,102959).pep
MNNQARAPVPSPARTSGSVRASTPVRTSIPVRTSTPVRTPTLVRASTPVRPPTPVQTPTP
VRASTPVWPPTPVRTPTPVGTSTPNRTPVRTPTPVWTRTLVRIPTPTPSSVPASESFSNS
APSLDPPPEPAAEPPLSPNKDPAPTPPSVKHVPSVAKGFGPPQAPLPALPPSATDLPGPN
LGSIPRADPSTTKLTDPPPGPIVPIVGTVPSTTPISPSPLASTSENFQVDSKITIRVIYC
YGLRYILLKKSLDQQFPNRLLFEQDISAQASGEFEVFVEGTLVHSKKKGDGFVDEVSLRK
IVSVINEEIRKR
//
