
genewise output
Score 1047.19 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000019_1.0  117 EAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCT 
                     EAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCT 
                     EAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCT 
gi|398921791|gb49985 gggggcttagagcccgggcggctttgcctgctggccgggggatcgggta 
                     acacctttggacttcgcacccagaggaatgatcgatgagcctatgatgc 
                     gcgcgccccgcggggccgccgccccccgccgctgggcccccgcgcggca 


SPP00000019_1.0  166 ATGERWELQLKGAGPTPFS                          QADG 
                     A GERWELQLKGAGPTPFS                          QADG 
                     AAGERWELQLKGAGPTPFS           R:R[aga]       QADG 
gi|398921791|gb50132 ggggctgcccagggcacttAGGTGGGTC  Intron 1   TAGAcggg 
                     ccgaggatatagcgccctc  <2-----[50191:52564]-2> acag 
                     gccgcggggcgccccgccc                          gttt 


SPP00000019_1.0  190 RKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKY 
                     RKVLRSSIREFLCSEAMFHLG+PTTRAGACVTS+STV+RDVFYDGNPKY 
                     RKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVIRDVFYDGNPKY 
gi|398921791|gb52578 cagcctaacgtctaggatccgacaaagggtgatctagacggttggacat 
                     gattgcgtgattggacttatgtcccgcgcgtccaccttgattaagacaa 
                     cagggaccagcgccacgccggcccggcgcccacgcactacgcttttaat 


SPP00000019_1.0  239 EQCTVVLRVASTFI                          FGSFEIFKS 
                     E+CTVVLR+ASTF+                          FGSFEIFKS 
                     EKCTVVLRIASTFL           R:R[agg]       FGSFEIFKS 
gi|398921791|gb52725 gataggtcagtatcAGGTAATGC  Intron 2   CAGGtgttgatat 
                     aagctttgtccctt  <2-----[52769:54260]-2> tgctattac 
                     aacatggtatctta                          ccctgttgt 


SPP00000019_1.0  263 ADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFF 
                     ADEHTGRAGPSVGRNDIRVQ+LDYVI SFYPEIQA+H SDSVQRNAAFF 
                     ADEHTGRAGPSVGRNDIRVQMLDYVIGSFYPEIQASHGSDSVQRNAAFF 
gi|398921791|gb54289 gggcagcggcaggaagacgcacgtgagattcgacgtcgagagcaaggtt 
                     caaacggcgcgtggaatgtattaattggtacataccaggagtagacctt 
                     atgcactacccggatccggggtctgtcttctacgcttctctgggtgccc 


SPP00000019_1.0  312 RE                       VTRRTARMVAEWQCVGFCHGVLNT 
                     RE                       VTRRTARMVAEWQCVGFCHGVLNT 
                     RE                       VTRRTARMVAEWQCVGFCHGVLNT 
gi|398921791|gb54436 cgGTAAGTG  Intron 3   CAGgaccagcagggtctggttcggcaa 
                     ga<0-----[54442:55981]-0>tcggccgttcagagtgtgagttac 
                     gg                       ggtcacgggtgggtccccccgcca 


SPP00000019_1.0  338 DNMSILGLTIDYGPFGFLD                          YDPD 
                     DNMSI+GLTIDYGPFGFLD                          YDPD 
                     DNMSIVGLTIDYGPFGFLD           R:R[cgg]       YDPD 
gi|398921791|gb56054 gaaaaggcaagtgctgtcgCGGTGAGCA  Intron 4   CAGGtgcg 
                     aatgttgtctaagctgtta  <2-----[56113:56696]-2> aaca 
                     ccgccggtccccgccccgc                          cccc 


SPP00000019_1.0  362 HVCNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEF 
                     HVCNASD+ GRYAYSKQPEVC+WNL+KLAEAL+PELP ELGEAILAEEF 
                     HVCNASDSAGRYAYSKQPEVCKWNLQKLAEALEPELPRELGEAILAEEF 
gi|398921791|gb56710 cgtagtgaggctgtaaccggtataccacgggcgcgcccgcgggacgggt 
                     atgaccagcggacagaacatgagataatcactacatcgatgacttcaat 
                     cgctcccctgctaccggtggcggcggggcgcggcggcaggtgccaggat 


SPP00000019_1.0  411 DAEFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT          
                     DAEF+RHYLQKMR+KLGLV  E EEDG LV+KLLETM LT          
                     DAEFRRHYLQKMRKKLGLVGAEREEDGVLVAKLLETMQLT          
gi|398921791|gb56857 gggtcactccaacaacgcggggcgggggcggaccgaacca          
                     acatggaataatgaatgttgcagaaagtttcattactatc          
                     ttgccgccggggcgggcgggcggggtagggcgcggcgggt          


SPP00000019_1.0  451                           ADFTNTFYLLSSFPVELESPGLA 
                                               ADFTNTFYLLSSFPV  ES GL  
                               G:G[ggt]        ADFTNTFYLLSSFPVGPESLGLT 
gi|398921791|gb56977 GGTGAGTG  Intron 5   CAGGTggtaaatttcattcggcgtcgca 
                      <1-----[56978:60351]-1>  catcactattgctctgcactgtc 
                                               tccaccccggcccaggtgtgcgc 


SPP00000019_1.0  475 EFLARLMEQCASLEELRLAFRPQMDP                        
                     EFLA L  QCASLEELRLAFRPQMDP                        
                     EFLAALTTQCASLEELRLAFRPQMDP           R:R[cgg]     
gi|398921791|gb60423 gtcggcaactgtcggcacgtcccagcCGGTGGGTA  Intron 6     
                     attcctccagcctaatgtctgcatac  <2-----[60503:61537]  
                     gcgtagcagtccggggggccacggtc                        


SPP00000019_1.0  501     QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE 
                         QLSMMLMLAQSNPQLFAL+GT+A + +ELERVEQQSRLEQLS AE 
                         QLSMMLMLAQSNPQLFALIGTQANVTKELERVEQQSRLEQLSPAE 
gi|398921791|gb61535 CAGGcctaacacgctaccctgcagacgagaagcgcggcctccgccacgg 
                     -2> atctttttcacacattcttgcacatcaatagtaaacgtaatgcca 
                         gccggggggggcagccgctccgaccaggggtggggggggggcgcg 


SPP00000019_1.0  547 LQSRNQGHWADWLQAY                          ARLDKDL 
                     L SRN+GHWADWLQ Y                          ARL++D  
                     LLSRNRGHWADWLQEY           R:R[aga]       ARLEEDR 
gi|398921791|gb61674 ccaaaagctggtccgtAGGTGAGGC  Intron 7   CAGAgccggga 
                     ttggaggagcagtaaa  <2-----[61724:61894]-2> cgtaaag 
                     ggcgcgccgttggggc                          cggggcg 


SPP00000019_1.0  571 EGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSE     
                     EGAGD  AWQAE V +MHANNPKYVLRNYIAQ AIEAAE GDFSE     
                     EGAGDPDAWQAERVHIMHANNPKYVLRNYIAQTAIEAAETGDFSE     
gi|398921791|gb61917 gggggcggtcggcgcaacgaacatgcaatagcagaggggaggttg     
                     agcgacacgacagtattacaacaattgaatcacctaccacgatca     
                     gttcctccggtgcgccgtccccgcgggcccggtcagtcgtaccag     


SPP00000019_1.0  616                        VRRVLKLLETPYHCEAGAATDAEATE 
                                            VRRVLKLLE PYH E  AA   EA + 
                                            VRRVLKLLEDPYHREGEAAEVPEAAQ 
gi|398921791|gb62052 GCAAGCG  Intron 8   CAGgcagcaccggctcagggggggcgggc 
                     <0-----[62052:62154]-0>tggttattaacaagagaccatcacca 
                                            ggaggggggctccggggttgccgtag 


SPP00000019_1.0  642 ADGAD-------GRQRSYSSKPPLWAAELCVT                  
                      +GA        GR+RSYSSKPPLWAAELCVT                  
                     PEGAGEGASRAAGRRRSYSSKPPLWAAELCVT                  
gi|398921791|gb62233 cgggggggaagggaccttaaaccctgggctga                  
                     cagcgagcggccggggcaggacctgccatgtc                  
                     tggttggccggccggcccccgcacgtaagtaa                  


//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
>gi|398921791|gb|JH767792.1|:subseq(11512165,112337).pep
EAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLK
GAGPTPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVIRDVFYDGNP
KYEKCTVVLRIASTFLRFGSFEIFKSADEHTGRAGPSVGRNDIRVQMLDYVIGSFYPEIQ
ASHGSDSVQRNAAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLD
RYDPDHVCNASDSAGRYAYSKQPEVCKWNLQKLAEALEPELPRELGEAILAEEFDAEFRR
HYLQKMRKKLGLVGAEREEDGVLVAKLLETMQLTGADFTNTFYLLSSFPVGPESLGLTEF
LAALTTQCASLEELRLAFRPQMDPRQLSMMLMLAQSNPQLFALIGTQANVTKELERVEQQ
SRLEQLSPAELLSRNRGHWADWLQEYRARLEEDREGAGDPDAWQAERVHIMHANNPKYVL
RNYIAQTAIEAAETGDFSEVRRVLKLLEDPYHREGEAAEVPEAAQPEGAGEGASRAAGRR
RSYSSKPPLWAAELCVT
//
