
genewise output
Score 188.51 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000013_1.0    2 VAMAAGPSGCLVPAFGLRLLLATVLQA                       
                     VAMAAGP G L PAFGLRLLLATVLQA                       
                     VAMAAGPGGWLRPAFGLRLLLATVLQA                       
gi|398920364|gb50000 ggagggcggtcccgtgcctctgagccgGTGAGTG  Intron 1      
                     tctccgcgggtgcctgtgtttccttac<0-----[50081:58487]   
                     aggctggtagtgggtgtgggggtgtag                       


SPP00000013_1.0   29    VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCC 
                        VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQF+LLQLDPDCRGCC 
                        VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFSLLQLDPDCRGCC 
gi|398920364|gb58485 CAGgtgtgggtttggtagtgttaatctattgccgctaccccgcgtcgtt 
                     -0>tcctgcatccacggatgtcgattggcgattgatgttatacaggggg 
                        gtgcgagttagtcagacccccgccccttttagccgtggttctaact 


SPP00000013_1.0   75 QEEAQFETKK                       LYAGAILEVCGXKLGR 
                     QEEAQFETKK                       LYAGAILEVCGXKLGR 
                     QEEAQFETKK                       LYAGAILEVCGXKLGR 
gi|398920364|gb58626 cgggctgaaaGTAATGT  Intron 2   CAGctgggacggtgtacga 
                     aaacatacaa<0-----[58656:78054]-0>tacgcttatgggatgg 
                     gaaaatacag                       gtaatttactaaaggg 


SPP00000013_1.0  101 FPQVQ                          CPWFRPCIKAFG       
                     FPQVQ                          C  FRPC KAFG       
                     FPQVQ          V:V[gta]        CSRFRPCTKAFG       
gi|398920364|gb78103 tccgcGGTATGTA  Intron 3   TAGTAttctactaagtg       
                     tcata <1-----[78119:86724]-1>  gcgtgcgcactg       
                     ctacg                          tggcacttatta       


//
Making a V in phase 1 intron
>gi|398920364|gb|JH767859.1|:subseq(1818253,136780).pep
VAMAAGPGGWLRPAFGLRLLLATVLQAVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQF
SLLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGXKLGRFPQVQVCSRFRPCTKAFG
//
