
genewise output
Score 317.56 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001585_2.0    1 MDRDEEPLSARPALETESLRFLHVT                         
                     M+ DEE LSARPALETE LRFLHVT                         
                     MEVDEEQLSARPALETEGLRFLHVT          V:V[gtg]       
gi|398922816|gb50000 agggggcctgccgcgaggcctccgaGGTGAGTC  Intron 1       
                     tataaaatccgcctacagtgttatc <1-----[50076:50774]    
                     ggccggggcgggtggcggaccgctg                         


SPP00001585_2.0   26      GSLLASYGWYILFSCILLYIVIQRLSLRLRALRQRQLDQAETVL 
                          GSLLA+YGWYI+FSCILLY+V+Q+LS RLRALRQRQLD+A   + 
                          GSLLATYGWYIVFSCILLYVVFQKLSTRLRALRQRQLDRAAAAV 
gi|398922816|gb50772 CAGTGgtccgatgttagtatacctggtcactaccagtacaccgcggggg 
                     -1>  gcttccaggatttggtttatttaatccgtgctgagatagcccct 
                          ctggcctcgccccccctccgtcgggcccggcgggggacatgtcg 


SPP00001585_2.0   71                           PDVVVKRQEALAAARLRMQEDLN 
                                               PD+VVKRQEALAAARL+MQE+LN 
                               E:E[gaa]        PDIVVKRQEALAAARLKMQEELN 
gi|398922816|gb50909 GGTTAGTG  Intron 2   TAGAAcgaggaccggtgggctaacggca 
                      <1-----[50910:52690]-1>  catttagaactcccgtataaata 
                                               tttttagaataatttgagagaat 


SPP00001585_2.0   95 AQVEKHKEKLRQ                       LEEEKRRQKIEMWD 
                     AQVEKHKEKLRQ                       LEEEKRR+KIEMWD 
                     AQVEKHKEKLRQ                       LEEEKRRRKIEMWD 
gi|398922816|gb52762 gcggacagacacGTACGAG  Intron 3   CAGcgggaaacaagatg 
                     cataaaaaatga<0-----[52798:55382]-0>taaaagggatatga 
                     aatagtggaaag                       taagagaggtaggc 


SPP00001585_2.0  121 SMQEGRSYKRNSGRPQ                       EEDGPGPSTS 
                     SMQEG+SYKRN+GRPQ                       EED PGPSTS 
                     SMQEGKSYKRNAGRPQ                       EEDSPGPSTS 
gi|398922816|gb55425 aacggaataaaggaccGTGATTG  Intron 4   CAGgggacgctat 
                     gtaagagaagacggca<0-----[55473:55572]-0>aaagcgcccc 
                     cgaaaatcaataagtg                       aacttgtttc 


SPP00001585_2.0  147 SVIPKGKSDKKPLRGG                          YNPLTGE 
                     SVIPK KSD+KPLRGG                          YNPL+GE 
                     SVIPKRKSDRKPLRGG          G:G[ggt]        YNPLSGE 
gi|398922816|gb55603 tgacacatgaactcggGGTAAGCA  Intron 5   CAGGTtacttgg 
                     cttcagacagactggg <1-----[55652:57425]-1>  aactcga 
                     accgaaatcagtggat                          cctgtta 


SPP00001585_2.0  171 GGGTCSWRPGRRGPSSGG                                
                     GGG CSWRPGRRGPSSGG                                
                     GGGACSWRPGRRGPSSGG                                
gi|398922816|gb57449 ggggtttacgcagcttgg                                
                     gggcgcggcggggcccgg                                
                     atacccgattcacgatta                                


//
Making a V in phase 1 intron
Making a E in phase 1 intron
Making a G in phase 1 intron
>gi|398922816|gb|JH767761.1|:subseq(4188318,107469).pep
MEVDEEQLSARPALETEGLRFLHVTVGSLLATYGWYIVFSCILLYVVFQKLSTRLRALRQ
RQLDRAAAAVEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKIEMWD
SMQEGKSYKRNAGRPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGACSWRPG
RRGPSSGG
//
