
genewise output
Score 982.88 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001580_2.0  118 EAEAALFFSGNALLPGTEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCT 
                     EAEAALFFSGNALLPG EPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCT 
                     EAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCT 
gi|398921791|gb49982 gggggcttagagcccgggcggctttgcctgctggccgggggatcgggta 
                     acacctttggacttcgcacccagaggaatgatcgatgagcctatgatgc 
                     gcgcgccccgcggggccgccgccccccgccgctgggcccccgcgcggca 


SPP00001580_2.0  167 AAGERWELQLKGAGPTPFS                          QADG 
                     AAGERWELQLKGAGPTPFS                          QADG 
                     AAGERWELQLKGAGPTPFS           R:R[aga]       QADG 
gi|398921791|gb50129 ggggctgcccagggcacttAGGTGGGTC  Intron 1   TAGAcggg 
                     ccgaggatatagcgccctc  <2-----[50188:52561]-2> acag 
                     gccgcggggcgccccgccc                          gttt 


SPP00001580_2.0  191 RKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSESTVMRDVFYDGNPKY 
                     RKVLRSSIREFLCSEAMFHLGIPTTRAGACVTS+STV+RDVFYDGNPKY 
                     RKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVIRDVFYDGNPKY 
gi|398921791|gb52575 cagcctaacgtctaggatccgacaaagggtgatctagacggttggacat 
                     gattgcgtgattggacttatgtcccgcgcgtccaccttgattaagacaa 
                     cagggaccagcgccacgccggcccggcgcccacgcactacgcttttaat 


SPP00001580_2.0  240 EKCTVVLRIAPTFI                          FGSFEIFKP 
                     EKCTVVLRIA TF+                          FGSFEIFK  
                     EKCTVVLRIASTFL           R:R[agg]       FGSFEIFKS 
gi|398921791|gb52722 gataggtcagtatcAGGTAATGC  Intron 2   CAGGtgttgatat 
                     aagctttgtccctt  <2-----[52766:54257]-2> tgctattac 
                     aacatggtatctta                          ccctgttgt 


SPP00001580_2.0  264 PDEHTGRAGPSVGRDDIRVQLLDYVISSFYPEIQAAHTCDTDNIQRNAA 
                      DEHTGRAGPSVGR+DIRVQ+LDYVI SFYPEIQA+H   +D++QRNAA 
                     ADEHTGRAGPSVGRNDIRVQMLDYVIGSFYPEIQASH--GSDSVQRNAA 
gi|398921791|gb54286 gggcagcggcaggaagacgcacgtgagattcgacgtc  gagagcaagg 
                     caaacggcgcgtggaatgtattaattggtacatacca  ggagtagacc 
                     atgcactacccggatccggggtctgtcttctacgctt  ctctgggtgc 


SPP00001580_2.0  313 FFRE                       VTQRTARMVAEWQCVGFCHGVL 
                     FFRE                       VT+RTARMVAEWQCVGFCHGVL 
                     FFRE                       VTRRTARMVAEWQCVGFCHGVL 
gi|398921791|gb54427 ttcgGTAAGTG  Intron 3   CAGgaccagcagggtctggttcggc 
                     ttga<0-----[54439:55978]-0>tcggccgttcagagtgtgagtt 
                     ccgg                       ggtcacgggtgggtccccccgc 


SPP00001580_2.0  339 NTDNMSIVGLTIDYGPFGFLD                          YD 
                     NTDNMSIVGLTIDYGPFGFLD                          YD 
                     NTDNMSIVGLTIDYGPFGFLD           R:R[cgg]       YD 
gi|398921791|gb56045 aagaaaaggcaagtgctgtcgCGGTGAGCA  Intron 4   CAGGtg 
                     acaatgttgtctaagctgtta  <2-----[56110:56693]-2> aa 
                     caccgccggtccccgccccgc                          cc 


SPP00001580_2.0  363 PDHICNASDNAGRYTYSKQPQVCKWNLQKLAEALEPELPLALAEAILKE 
                     PDH+CNASD+AGRY YSKQP+VCKWNLQKLAEALEPELP  L EAIL E 
                     PDHVCNASDSAGRYAYSKQPEVCKWNLQKLAEALEPELPRELGEAILAE 
gi|398921791|gb56701 cgcgtagtgaggctgtaaccggtataccacgggcgcgcccgcgggacgg 
                     caatgaccagcggacagaacatgagataatcactacatcgatgacttca 
                     cccgctcccctgctaccggtggcggcggggcgcggcggcaggtgccagg 


SPP00001580_2.0  412 EFDTEFQRHYLQKMRKKLGLIRVEKEEDGTLVAKLLETMHLT        
                     EFD EF+RHYLQKMRKKLGL+  E+EEDG LVAKLLETM LT        
                     EFDAEFRRHYLQKMRKKLGLVGAEREEDGVLVAKLLETMQLT        
gi|398921791|gb56848 gtgggtcactccaacaacgcggggcgggggcggaccgaacca        
                     atacatggaataatgaatgttgcagaaagtttcattactatc        
                     atttgccgccggggcgggcgggcggggtagggcgcggcgggt        


SPP00001580_2.0  454                           ADFTNTFCVLSSFPA--DLSDSA 
                                               ADFTNTF +LSSFP          
                               G:G[ggt]        ADFTNTFYLLSSFPVGPESLGLT 
gi|398921791|gb56974 GGTGAGTG  Intron 5   CAGGTggtaaatttcattcggcgtcgca 
                      <1-----[56975:60348]-1>  catcactattgctctgcactgtc 
                                               tccaccccggcccaggtgtgcgc 


SPP00001580_2.0  476 EFLSRLTSQCASLEELRLAFRPQMDP                        
                     EFL+ LT+QCASLEELRLAFRPQMDP                        
                     EFLAALTTQCASLEELRLAFRPQMDP           R:R[cgg]     
gi|398921791|gb60420 gtcggcaactgtcggcacgtcccagcCGGTGGGTA  Intron 6     
                     attcctccagcctaatgtctgcatac  <2-----[60500:61534]  
                     gcgtagcagtccggggggccacggtc                        


SPP00001580_2.0  502     QLSMMLMLAQSNPQLFALIGTQANVTKELERVEHQSRLEQLSPSD 
                         QLSMMLMLAQSNPQLFALIGTQANVTKELERVE QSRLEQLSP++ 
                         QLSMMLMLAQSNPQLFALIGTQANVTKELERVEQQSRLEQLSPAE 
gi|398921791|gb61532 CAGGcctaacacgctaccctgcagacgagaagcgcggcctccgccacgg 
                     -2> atctttttcacacattcttgcacatcaatagtaaacgtaatgcca 
                         gccggggggggcagccgctccgaccaggggtggggggggggcgcg 


SPP00001580_2.0  548 LQRKNRDHWEAWLQEY                          DRLDKEK 
                     L  +NR HW  WLQEY                           RL++++ 
                     LLSRNRGHWADWLQEY           R:R[aga]       ARLEEDR 
gi|398921791|gb61671 ccaaaagctggtccgtAGGTGAGGC  Intron 7   CAGAgccggga 
                     ttggaggagcagtaaa  <2-----[61721:61891]-2> cgtaaag 
                     ggcgcgccgttggggc                          cggggcg 


SPP00001580_2.0  572 EGVGDTAAWQAERVRVMRANNPKYVLRNYIAQKAIEAAENGDFSE     
                     EG GD  AWQAERV +M ANNPKYVLRNYIAQ AIEAAE GDFSE     
                     EGAGDPDAWQAERVHIMHANNPKYVLRNYIAQTAIEAAETGDFSE     
gi|398921791|gb61914 gggggcggtcggcgcaacgaacatgcaatagcagaggggaggttg     
                     agcgacacgacagtattacaacaattgaatcacctaccacgatca     
                     gttcctccggtgcgccgtccccgcgggcccggtcagtcgtaccag     


SPP00001580_2.0  617                        VRRVLKLLESPYHSEEEATG-PEA-- 
                                            VRRVLKLLE PYH E EA   PEA   
                                            VRRVLKLLEDPYHREGEAAEVPEAAQ 
gi|398921791|gb62049 GCAAGCG  Intron 8   CAGgcagcaccggctcagggggggcgggc 
                     <0-----[62049:62151]-0>tggttattaacaagagaccatcacca 
                                            ggaggggggctccggggttgccgtag 


SPP00001580_2.0  640 -------VARSTEEQSSYSNRPPLWAAELCVT                  
                             +R+   + SYS++PPLWAAELCVT                  
                     PEGAGEGASRAAGRRRSYSSKPPLWAAELCVT                  
gi|398921791|gb62230 cgggggggaagggaccttaaaccctgggctga                  
                     cagcgagcggccggggcaggacctgccatgtc                  
                     tggttggccggccggcccccgcacgtaagtaa                  


//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
>gi|398921791|gb|JH767792.1|:subseq(11512168,112334).pep
EAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLK
GAGPTPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVIRDVFYDGNP
KYEKCTVVLRIASTFLRFGSFEIFKSADEHTGRAGPSVGRNDIRVQMLDYVIGSFYPEIQ
ASHGSDSVQRNAAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLD
RYDPDHVCNASDSAGRYAYSKQPEVCKWNLQKLAEALEPELPRELGEAILAEEFDAEFRR
HYLQKMRKKLGLVGAEREEDGVLVAKLLETMQLTGADFTNTFYLLSSFPVGPESLGLTEF
LAALTTQCASLEELRLAFRPQMDPRQLSMMLMLAQSNPQLFALIGTQANVTKELERVEQQ
SRLEQLSPAELLSRNRGHWADWLQEYRARLEEDREGAGDPDAWQAERVHIMHANNPKYVL
RNYIAQTAIEAAETGDFSEVRRVLKLLEDPYHREGEAAEVPEAAQPEGAGEGASRAAGRR
RSYSSKPPLWAAELCVT
//
