
genewise output
Score 270.19 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001563_2.0    1 MAAGQGGWLRPALGLRLLLATAFQA                       A 
                     MAAG GGWLRPA GLRLLLAT +QA                         
                     MAAGPGGWLRPAFGLRLLLATVLQA                       V 
gi|398920364|gb41518 agggcggtcccgtgcctctgagccgGTGAGTG  Intron 1   CAGg 
                     tccgcgggtgcctgtgtttccttac<0-----[41593:49999]-0>t 
                     gctggtagtgggtgtgggggtgtag                       g 


SPP00001563_2.0   27 SALGAEFASEACRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQEEA 
                     SA GAEF+SEACRELGFSSNLLCSSCDLLGQF+LL LDP CRGCCQEEA 
                     SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFSLLQLDPDCRGCCQEEA 
gi|398920364|gb50003 tgtgggtttggtagtgttaatctattgccgctaccccgcgtcgttcggg 
                     cctgcatccacggatgtcgattggcgattgatgttatacagggggaaac 
                     tgcgagttagtcagacccccgccccttttagccgtggttctaactgaaa 


SPP00001563_2.0   76 QFETKK                       LYAGAILEVCGXKLGRFPQV 
                     QFETKK                       LYAGAILEVCGXKLGRFPQV 
                     QFETKK                       LYAGAILEVCGXKLGRFPQV 
gi|398920364|gb50150 ctgaaaGTAATGT  Intron 2   CAGctgggacggtgtacgatccg 
                     atacaa<0-----[50168:69566]-0>tacgcttatgggatggtcat 
                     atacag                       gtaatttactaaagggctac 


SPP00001563_2.0  102 Q                          FVRSDKPKLFRGLQIK       
                     Q                          FVRSDKPKLFRGLQIK       
                     Q          A:A[gct]        FVRSDKPKLFRGLQIK       
gi|398920364|gb69627 cGGTATGTA  Intron 3   CAGCTtgaagacactagccaa       
                     a <1-----[69631:75950]-1>  ttggaacattggtata       
                     g                          tcgttacaccaagacg       


SPP00001563_2.0  120                        YVRGSDPVLKLLDDNGNIAEELSILK 
                                            YVRGSDPVLKLLDDNGNIAEELSILK 
                                            YVRGSDPVLKLLDDNGNIAEELSILK 
gi|398920364|gb76001 GTAAAGT  Intron 4   TAGtgcgtgcgcactggagaagggcaaca 
                     <0-----[76001:78236]-0>atggcacttattaaagatcaatgtta 
                                            ttctactaagtgtctgcttaaaccca 


SPP00001563_2.0  146 WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
gi|398920364|gb78315 taagagggtcagatgca                                 
                     gacagtaattgaatagt                                 
                     gcactaagcgtaggaca                                 


//
Making a A in phase 1 intron
>gi|398920364|gb|JH767859.1|:subseq(1826741,128365).pep
MAAGPGGWLRPAFGLRLLLATVLQAVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFSL
LQLDPDCRGCCQEEAQFETKKLYAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKY
VRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
//
