
genewise output
Score 22.23 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001557_2.0  549 KKGKEKEIAKLKRPTALKKVIL                            
                     KKGK+K + + +RP  L  +IL                            
                     KKGKKKNVYRSQRPFCLSSLIL                            
gi|398924730|gb15822 aagaaaagtaacacttcatcac                            
                     aagaaaataggagctgtgcttt                            
                     aaaagacatgcagcccgtggtg                            


//
>gi|398924730|gb|JH767728.1|:subseq(30580663,142843).pep
KKGKKKNVYRSQRPFCLSSLIL
//





genewise output
Score 236.66 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001557_2.0  469 KAAGKKTKTPVQLDLGDMLAALEKQQQAMKARQITNTRPLAHP       
                     K +GKK++TPVQLDLG ML ALEK+Q ++ A+Q   ++P+          
                     KNSGKKSQTPVQLDLGGMLTALEKKQHSQNAKQ--PSKPVVFS       
gi|398923423|gb50000 aaagaaacacgctgtggacagcgaacctcagac  ctacggtt       
                     aaggaagacctatatggttcctaaaaacaacaa  ccactttc       
                     attaggcataaggtggaggaagggggccgtagg  gcagggca       


SPP00001557_2.0  512                           VTTATFHTKDSNRKTLAKSQPCV 
                                               ++      K  +R +  K      
                               V:V[gtc]        LSKEATSGKKGHRFSEVK----- 
gi|398923423|gb50123 GGTGAGAG  Intron 1   CAGTCctaggatgaagcctagga      
                      <1-----[50124:59773]-1>  tcaacccgaagagtgata      
                                               ccagcgagggcccccagg      


SPP00001557_2.0  536 TSFNSLDITSSKAKKGKEKEIAKLKRPTALKK                  
                     T  N LD ++   KKGK++E+ K K+PT+LKK                  
                     TPHNPLDSSAPLMKKGKQREVPKAKKPTSLKK                  
gi|398923423|gb59830 accaccgtagccaaagacaggcagaacattaa                  
                     ccaactacgccttaagaagatcacaaccctaa                  
                     cgcccgcctccggggaggggccacggacgggg                  


SPP00001557_2.0  568                        VILKEREEKKGRLIVEHSVLGAEEPT 
                                            +ILKER+E+K + + E+++  A     
                                            IILKERQERKQQRLQENAMSPAFA-S 
gi|398923423|gb59926 GTGTGTG  Intron 2   AAGaatagccgaacccccgagaacgtg a 
                     <0-----[59926:60569]-0>tttaagaagaaagtaaactgcctc g 
                                            ttgaatggagggtcgatcgtattc t 


SPP00001557_2.0  594 ETHLDLTNDLPQETVSQEDAG                          SM 
                     +   D  +      + Q D                             M 
                     DGAQDAESGGDDWALEQVDPS          L:E[gag]        EM 
gi|398923423|gb60645 gggcgggaggggtgcgcggctGGTACCCA  Intron 3   CAGAGga 
                     agcaacagggaagctaatacc <1-----[60709:62210]-1>  at 
                     ttagtagttttcgccgggcca                          gg 


SPP00001557_2.0  618 PSDASLSPASQNSPYCMTPVSQGSPASSGIGSPMASSTITKIHSKRFR  
                         S +P  ++               +   +P  S+   +IHS+RFR  
                     EEAVSSTPVVESKSEEPLGAELQKEVEACHLAP-GSAACPRIHSRRFR  
gi|398923423|gb62219 ggggttacgggaatggccgggccaggggtccgc gaggtcaacacata  
                     aactccccttagacaactgcataaatacgatcc ggccgcgtagggtg  
                     agggccttgggcgaaggggagcgggggcccggt ctccccgcccgacg  


SPP00001557_2.0  666                           YCNQVLSKEIDECVTLLLQELVS 
                                               YC+Q+LSKE+D CVT LL+ELV  
                                E:D[gat]       YCSQILSKEVDACVTDLLKELVR 
gi|398923423|gb62360 GAGTGAGTG  Intron 4   CAGTttacacaaggggtgagccagcgc 
                       <2-----[62362:63057]-2> aggattgaatacgtcattaattg 
                                               cccgactaagccttgcggaggct 


SPP00001557_2.0  690 FQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNCEKIQS 
                     FQ+R+YQKDPV+A+ +RRLV+GLREV KH+KL K+KC+IISPNCEKIQS 
                     FQDRMYQKDPVKARTKRRLVLGLREVLKHLKLRKLKCIIISPNCEKIQS 
gi|398923423|gb63128 tcgcatcagcgagaaacccgtgcaggcaccacaacataaatcatgaact 
                     taagtaaaactacgcaggtttgtgattaatatgatagtttccagaatac 
                     caccgcgatacgcgcgcgcggggggccgcggcggggcccctcccgacgg 


SPP00001557_2.0  739 K                          GLDEALYNVIAMAREQEIPFVF 
                     K                          GLD+ L+ +I  A EQ IP VF 
                     K          G:G[ggt]        GLDDTLHTIIDYACEQNIPCVF 
gi|398923423|gb63275 aGGTGAGGG  Intron 5   CAGGTgcggaccaaagtgtgcaactgt 
                     a <1-----[63279:69443]-1>  gtaactacttaacgaaatcgtt 
                     a                          ggtccgcccttcctggctctgt 


SPP00001557_2.0  763 ALGRKALGRCVNKLVPVSVVGIFNYFGAE                     
                     AL RKALGR +NK VPVSVVGIF+Y GA+                     
                     ALNRKALGRSLNKAVPVSVVGIFSYDGAQ                     
gi|398923423|gb69512 gcacagcgcacaaggcgagggatatgggcGTGAGAC  Intron 6    
                     ctagactgggtaactctgttgttgaagca<0-----[69599:69939] 
                     acccatggctgcacttccgggcccctacg                     


SPP00001557_2.0  792    SLFNRLVELTEEARKAYKDMVAATEQE                    
                          F+++VELT  AR+AY+ M+    QE                    
                        DQFHKMVELTMAARQAYRTMLENVHQE                    
gi|398923423|gb69937 AAGgctcaaggcaaggccgtaaacgagccg                    
                     -0>aataattatctccgacagcttaataaa                    
                        cgccggcgggggcgggcgcgggcgcgg                    


//
Making a V in phase 1 intron
Making a E in phase 1 intron
Making a D in phase 2 intron
Making a G in phase 1 intron
>gi|398923423|gb|JH767747.1|:subseq(16258547,119598).pep
KNSGKKSQTPVQLDLGGMLTALEKKQHSQNAKQPSKPVVFSVLSKEATSGKKGHRFSEVK
TPHNPLDSSAPLMKKGKQREVPKAKKPTSLKKIILKERQERKQQRLQENAMSPAFASDGA
QDAESGGDDWALEQVDPSEEMEEAVSSTPVVESKSEEPLGAELQKEVEACHLAPGSAACP
RIHSRRFRDYCSQILSKEVDACVTDLLKELVRFQDRMYQKDPVKARTKRRLVLGLREVLK
HLKLRKLKCIIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPCVFALNRKALGRSLNKAV
PVSVVGIFSYDGAQDQFHKMVELTMAARQAYRTMLENVHQE
//


