
genewise output
Score 312.31 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000880_2.0   51 LFIPQNPAACPTPPRTCPPTPQMVEKRLF                     
                     LFIPQNP  CPTP    P T QMVEK LF                     
                     LFIPQNPE!CPTPSGLLPLTSQMVEKPLF                     
gi|398922816|gb49731 ctaccacg4tcactgccccatcaggacct                     
                     tttcaaca gccccgttctccattaactt                     
                     ccctacag ctgccatctgtcggtggctc                     


SPP00000880_2.0   80                           GSLLAAYGWYLVFSCILLYVLFQ 
                                               GSLLA YGWY+VFSCILLYV+FQ 
                               M:M[atg]        GSLLATYGWYIVFSCILLYVVFQ 
gi|398922816|gb49819 AGTGACCC  Intron 1   CAGTGgtccgatgttagtatacctggtc 
                      <1-----[49820:50000]-1>  gcttccaggatttggtttattta 
                                               ctggcctcgccccccctccgtcg 


SPP00000880_2.0  104 KLSSRLRALRQRRLDRAAAAV                          PD 
                     KLS+RLRALRQR+LDRAAAAV                          PD 
                     KLSTRLRALRQRQLDRAAAAV          E:E[gaa]        PD 
gi|398922816|gb50072 actaccagtacaccgcgggggGGTTAGTG  Intron 2   TAGAAcg 
                     atccgtgctgagatagcccct <1-----[50136:51916]-1>  ca 
                     ggcccggcgggggacatgtcg                          tt 


SPP00000880_2.0  128 VVVKRQEALAAARLKMQEELNAQVEKHKEKLRQ                 
                     +VVKRQEALAAARLKMQEELNAQVEKHKEKLRQ                 
                     IVVKRQEALAAARLKMQEELNAQVEKHKEKLRQ                 
gi|398922816|gb51925 aggaccggtgggctaacggcagcggacagacac                 
                     tttagaactcccgtataaatacataaaaaatga                 
                     tttagaataatttgagagaataatagtggaaag                 


SPP00000880_2.0  161                        LEEEKRRRKIEMWDSMQEGKSYKRNA 
                                            LEEEKRRRKIEMWDSMQEGKSYKRNA 
                                            LEEEKRRRKIEMWDSMQEGKSYKRNA 
gi|398922816|gb52024 GTACGAG  Intron 3   CAGcgggaaacaagatgaacggaataaag 
                     <0-----[52024:54608]-0>taaaagggatatgagtaagagaagac 
                                            taagagaggtaggccgaaaatcaata 


SPP00000880_2.0  187 RGPQ                       EEDSPGPSTSSVIPKRKSDRKP 
                       PQ                       EEDSPGPSTSSVIPKRKSDRKP 
                     GRPQ                       EEDSPGPSTSSVIPKRKSDRKP 
gi|398922816|gb54687 gaccGTGATTG  Intron 4   CAGgggacgctattgacacatgaac 
                     ggca<0-----[54699:54798]-0>aaagcgcccccttcagacagac 
                     agtg                       aacttgtttcaccgaaatcagt 


SPP00000880_2.0  213 LRGG                          YNPLSGEGGGACSWRPGRR 
                     LRGG                          YNPLSGEGGGACSWRPGRR 
                     LRGG          G:G[ggt]        YNPLSGEGGGACSWRPGRR 
gi|398922816|gb54865 tcggGGTAAGCA  Intron 5   CAGGTtacttggggggtttacgca 
                     tggg <1-----[54878:56651]-1>  aactcgagggcgcggcggg 
                     ggat                          cctgttaatacccgattca 


SPP00000880_2.0  237 GPSSGG                                            
                     GPSSGG                                            
                     GPSSGG                                            
gi|398922816|gb56711 gcttgg                                            
                     gcccgg                                            
                     cgatta                                            


//
Making a M in phase 1 intron
Making a E in phase 1 intron
Making a G in phase 1 intron
>gi|398922816|gb|JH767761.1|:subseq(4189092,106695).pep
LFIPQNPEXCPTPSGLLPLTSQMVEKPLFMGSLLATYGWYIVFSCILLYVVFQKLSTRLR
ALRQRQLDRAAAAVEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRRKI
EMWDSMQEGKSYKRNAGRPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGACS
WRPGRRGPSSGG
//
