
genewise output
Score 22.23 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000862_2.0  522 KKGKEKEIAKLKRPTALKKVIL                            
                     KKGK+K + + +RP  L  +IL                            
                     KKGKKKNVYRSQRPFCLSSLIL                            
gi|398924730|gb15978 aagaaaagtaacacttcatcac                            
                     aagaaaataggagctgtgcttt                            
                     aaaagacatgcagcccgtggtg                            


//
>gi|398924730|gb|JH767728.1|:subseq(30580507,142999).pep
KKGKKKNVYRSQRPFCLSSLIL
//




genewise output
Score 221.30 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000862_2.0  626 SSTITKIHSKRFR                          YCNQVLCKEI 
                     S+   +IHS+RFR                          YC+Q+L KE+ 
                     SAACPRIHSRRFR           E:D[gat]       YCSQILSKEV 
gi|398923423|gb49262 aggtcaacacataGAGTGAGTG  Intron 1   CAGTttacacaagg 
                     gccgcgtagggtg  <2-----[49303:49998]-2> aggattgaat 
                     tccccgcccgacg                          cccgactaag 


SPP00000862_2.0  650 DECVTLLLQELVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIK 
                     D CVT LL+ELV FQ+R+YQKDPV+A+ +RRLV+GLREV KH+KL K+K 
                     DACVTDLLKELVRFQDRMYQKDPVKARTKRRLVLGLREVLKHLKLRKLK 
gi|398923423|gb50030 ggtgagccagcgctcgcatcagcgagaaacccgtgcaggcaccacaaca 
                     acgtcattaattgtaagtaaaactacgcaggtttgtgattaatatgata 
                     ccttgcggaggctcaccgcgatacgcgcgcgcggggggccgcggcgggg 


SPP00000862_2.0  699 CVIISPNCEKIQSK                          GLDEALYNV 
                     C+IISPNCEKIQSK                          GLD+ L+ + 
                     CIIISPNCEKIQSK          G:G[ggt]        GLDDTLHTI 
gi|398923423|gb50177 taaatcatgaactaGGTGAGGG  Intron 2   CAGGTgcggaccaa 
                     gtttccagaataca <1-----[50220:56384]-1>  gtaactact 
                     cccctcccgacgga                          ggtccgccc 


SPP00000862_2.0  723 IAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYFGAE        
                     I  A EQ IP VFAL RKALGR +NK VPVSVVGIF+Y GA+        
                     IDYACEQNIPCVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ        
gi|398923423|gb56414 agtgtgcaactgtgcacagcgcacaaggcgagggatatgggc        
                     taacgaaatcgttctagactgggtaactctgttgttgaagca        
                     ttcctggctctgtacccatggctgcacttccgggcccctacg        


SPP00000862_2.0  765                        SLFNKLVALTEEARRAYKDMVAALEQ 
                                              F+K+V LT  AR+AY+ M+  + Q 
                                            DQFHKMVELTMAARQAYRTMLENVHQ 
gi|398923423|gb56540 GTGAGAC  Intron 3   AAGgctcaaggcaaggccgtaaacgagcc 
                     <0-----[56540:56880]-0>aataattatctccgacagcttaataa 
                                            cgccggcgggggcgggcgcgggcgcg 


SPP00000862_2.0  791 EQAEEASKNVKKGPHHMG                                
                     E   E       GP  +G                                
                     ELVGEPGPQAPAGPPTQG                                
gi|398923423|gb56959 gcgggcgccgcggccacg                                
                     attgacgcacccgcccag                                
                     gggagtgtggttcgcagc                                


//
Making a D in phase 2 intron
Making a G in phase 1 intron
>gi|398923423|gb|JH767747.1|:subseq(16271606,106539).pep
SAACPRIHSRRFRDYCSQILSKEVDACVTDLLKELVRFQDRMYQKDPVKARTKRRLVLGL
REVLKHLKLRKLKCIIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPCVFALNRKALGRS
LNKAVPVSVVGIFSYDGAQDQFHKMVELTMAARQAYRTMLENVHQELVGEPGPQAPAGPP
TQG
//


