Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/E.GPx6.1.fa.x.fa -t 3B.fastasub.dir/9.E.GPx6.1.fa.x.fa]
Hostname: [ws101159]

C4 Alignment:
------------
         Query: SPP00000855_2.0 # Protein # Glutathione peroxidase 6 (GPx6) # Horse (Equus caballus)
        Target: gi|398920810|gb|JH767833.1|:subseq(2505870,139497) Ceratotherium simum simum unplaced genomic scaffold scaffold00111, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1095
   Query range: 0 -> 221
  Target range: 79001 -> 89497

     1 : MetIleArgGlnLeuTrpAlaSerSerLeuPheProLeuPheLeuValGlyPheAlaGln :    20
         |||||||||!:!!!!! !||||||!!!|||||||||||||||:!!|||||||||||||||
         MetIleArgArgPheLeuAlaSerCysLeuPheProLeuPheValValGlyPheAlaGln
 79002 : ATGATTCGGCGGTTCTTGGCCTCCTGTCTTTTCCCGCTGTTCGTGGTCGGCTTTGCTCAG : 79059

    21 : LeuThrProGluSerGlnLysMetLys  >>>> Target Intron 1 >>>>  MetA :    31
         |||||||||||||||||||||||||||           3421 bp           ||||
         LeuThrProGluSerGlnLysMetLys++                         ++MetA
 79060 : CTGACCCCAGAGTCACAAAAGATGAAGgt.........................agATGG : 82513

    32 : spCysTyrLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrLeuAsnGlyG :    51
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         spCysTyrLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrLeuAsnGlyG
 82514 : ATTGCTATAAGGGGGTGACAGGCACCATCTATGAGTATGGAGCCCTCACCCTCAATGGCG : 82573

    52 : luGluTyrIleGlnPheLysGlnTyrAlaGlyLysHisValLeuPheIleAsnValAlaT :    71
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         luGluTyrIleGlnPheLysGlnTyrAlaGlyLysHisValLeuPheIleAsnValAlaT
 82574 : AGGAGTATATCCAGTTCAAGCAGTATGCGGGCAAGCACGTCCTCTTTATCAATGTGGCCA : 82633

    72 : hrTyrUnkGlyLeuThrAlaGlnTyrPro{G}  >>>> Target Intron 2 >>>>  :    81
         |||||   |||||||||||||||||||||{|}           4440 bp          
         hrTyr***GlyLeuThrAlaGlnTyrPro{G}++                         +
 82634 : CCTATTGAGGCTTGACAGCTCAGTATCCT{G}gt.........................a : 87102

    82 :  {lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyValValLeuLeuGlyPheP :   100
          {||}|||||||||||||||||||||||||||||||||||||||||||||||||||||||
         +{lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyValValLeuLeuGlyPheP
 87103 : g{AA}CTGAATGCACTACAGGAGGAGCTGAAGCCTTTTGGTGTAGTTTTGTTGGGCTTTC : 87160

   101 : roCysAsnGlnPheGlyLysGlnGluProGlyLysAsnSerGluIleLeuSerGlyLeu{ :   120
         ||||||||||||||||||||||||||||||||||||||||||||||||||! !||||||{
         roCysAsnGlnPheGlyLysGlnGluProGlyLysAsnSerGluIleLeuPheGlyLeu{
 87161 : CCTGCAACCAGTTTGGAAAACAAGAACCAGGAAAAAACTCAGAGATCCTTTTTGGGCTC{ : 87220

   121 : Ly}  >>>> Target Intron 3 >>>>  {s}TyrValArgProGlyGlyGlyPheV :   129
         ||}            487 bp           {|}|||||||||||||||||||||||||
         Ly}++                         ++{s}TyrValArgProGlyGlyGlyPheV
 87221 : AA}gt.........................ag{G}TATGTGCGTCCAGGTGGTGGCTTTG : 87734

   130 : alProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValP :   149
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         alProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValP
 87735 : TCCCCAACTTTCAGCTCTTTGAGAAAGGGGATGTGAATGGAGAAAAAGAACAGAAGGTCT : 87794

   150 : heThrPheLeuLys  >>>> Target Intron 4 >>>>  AsnSerCysProProTh :   159
         ||||||||||||||           1485 bp           |||||||||||||||||
         heThrPheLeuLys++                         ++AsnSerCysProProTh
 87795 : TTACCTTCCTGAAGgt.........................agAACTCCTGCCCTCCAAC : 89309

   160 : rSerAspLeuLeuGlySerProLysGlnLeuPheTrpGluProMetLysValHisAspIl :   179
         ||||||||||||||||||| !!!!.||||||||||||! !||||||||||||||||||||
         rSerAspLeuLeuGlySerSerAsnGlnLeuPheTrpAlaProMetLysValHisAspIl
 89310 : CTCTGATCTTTTGGGCTCATCAAACCAACTCTTCTGGGCGCCCATGAAGGTCCATGACAT : 89369

   180 : eArgTrpAsnPheGluLysPheLeuValGlyProAspGlyValProValMetArgTrpPh :   199
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         eArgTrpAsnPheGluLysPheLeuValGlyProAspGlyValProValMetArgTrpPh
 89370 : CCGCTGGAACTTTGAGAAGTTCCTGGTGGGACCTGATGGGGTCCCTGTCATGCGCTGGTT : 89429

   200 : eHisArgAlaSerValSerThrValLysSerAspIleLeuGluTyrLeuLysGlnPheTh :   219
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||! 
         eHisArgAlaSerValSerThrValLysSerAspIleLeuGluTyrLeuLysGlnPheLy
 89430 : CCACCGGGCTTCAGTTAGCACAGTCAAGTCAGACATCCTGGAGTACCTGAAGCAGTTCAA : 89489

   220 : rProGlu :   221
         ! !!|||
         sSerGlu
 89490 : ATCCGAA : 89497

vulgar: SPP00000855_2.0 0 221 . gi|398920810|gb|JH767833.1|:subseq(2505870,139497) 79001 89497 + 1095 M 29 87 5 0 2 I 0 3417 3 0 2 M 51 153 S 0 1 5 0 2 I 0 4436 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 483 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1481 3 0 2 M 68 204
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-28
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	gene	79002	89497	1095	+	.	gene_id 1 ; sequence SPP00000855_2.0 ; gene_orientation +
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	cds	79002	79088	.	+	.	
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	exon	79002	79088	.	+	.	insertions 0 ; deletions 0
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice5	79089	79090	.	+	.	intron_id 1 ; splice_site "GT"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	intron	79089	82509	.	+	.	intron_id 1
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice3	82508	82509	.	+	.	intron_id 0 ; splice_site "AG"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	cds	82510	82663	.	+	.	
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	exon	82510	82663	.	+	.	insertions 0 ; deletions 0
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice5	82664	82665	.	+	.	intron_id 2 ; splice_site "GT"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	intron	82664	87103	.	+	.	intron_id 2
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice3	87102	87103	.	+	.	intron_id 1 ; splice_site "AG"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	cds	87104	87221	.	+	.	
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	exon	87104	87221	.	+	.	insertions 0 ; deletions 0
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice5	87222	87223	.	+	.	intron_id 3 ; splice_site "GT"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	intron	87222	87708	.	+	.	intron_id 3
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice3	87707	87708	.	+	.	intron_id 2 ; splice_site "AG"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	cds	87709	87808	.	+	.	
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	exon	87709	87808	.	+	.	insertions 0 ; deletions 0
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice5	87809	87810	.	+	.	intron_id 4 ; splice_site "GT"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	intron	87809	89293	.	+	.	intron_id 4
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice3	89292	89293	.	+	.	intron_id 3 ; splice_site "AG"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	cds	89294	89497	.	+	.	
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	exon	89294	89497	.	+	.	insertions 0 ; deletions 0
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	similarity	79002	89497	1095	+	.	alignment_id 1 ; Query SPP00000855_2.0 ; Align 79002 1 87 ; Align 82510 30 153 ; Align 87106 82 114 ; Align 87710 121 99 ; Align 89294 154 204
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000855_2.0 # Protein # Glutathione peroxidase 6 (GPx6) # Horse (Equus caballus)
        Target: gi|398920810|gb|JH767833.1|:subseq(2505870,139497) Ceratotherium simum simum unplaced genomic scaffold scaffold00111, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 920
   Query range: 0 -> 218
  Target range: 57602 -> 49999

     1 : MetIleArgGlnLeuTrpAlaSerSerLeuPheProLeuPheLeuValGlyPheAlaGln :    20
         |||! !  !|||||| !!||||||! !||||||||||||||||||!.!||||||!.!|||
         MetThrAlaGlnLeuArgAlaSerTyrLeuPheProLeuPheLeuAlaGlyPheValGln
 57602 : ATGACTGCACAGTTAAGGGCCTCCTATCTCTTCCCCCTTTTCCTAGCTGGCTTTGTGCAG : 57545

    21 : LeuThrProGluSerGlnLysMetLys  >>>> Target Intron 1 >>>>  MetA :    31
           !  !|||:!! !!:!!|||||||||           2556 bp           ! !|
         ThrAspProLysProGluLysMetLys++                         ++ThrA
 57544 : ACAGATCCCAAGCCAGAGAAGATGAAGgt.........................agACGG : 54956

    32 : spCysTyrLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrLeuAsnGlyG :    51
         |||||||||||! !|||! !||||||||||||||||||! !|||:!!||||||!!.|||.
         spCysTyrLysAspValLysGlyThrIleTyrGluTyrAspAlaIleThrLeuLysGlyA
 54955 : ATTGCTACAAAGATGTGAAAGGCACCATCTATGAATATGACGCCATCACTCTTAAAGGAA : 54896

    52 : luGluTyrIleGlnPheLysGlnTyrAlaGlyLysHisValLeuPheIleAsnValAlaT :    71
         .!|||:!!||||||||||||!:!||||||||||||||||||||||||:!!||||||||||
         rgGluHisIleGlnPheLysArgTyrAlaGlyLysHisValLeuPheValAsnValAlaT
 54895 : GGGAACACATTCAGTTCAAGCGGTATGCGGGCAAGCATGTCCTTTTTGTCAATGTGGCCA : 54836

    72 : hrTyrUnkGlyLeuThrAlaGlnTyrPro{G}  >>>> Target Intron 2 >>>>  :    81
         |||||   |||||||||||||||||||||{|}           2832 bp          
         hrTyrCysGlyLeuThrAlaGlnTyrPro{G}++                         +
 54835 : CCTATTGTGGTCTGACGGCTCAATATCCT{G}gt.........................a : 51975

    82 :  {lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyValValLeuLeuGlyPheP :   100
          {||}||||||.!!|||||||||||||||||| !!||||||:!!|||:!!||||||||||
         +{lu}LeuAsnThrLeuGlnGluGluLeuLysSerPheGlyLeuValValLeuGlyPheP
 51974 : g{AA}CTGAATACACTTCAGGAGGAGCTGAAGTCCTTTGGCTTAGTTGTGTTGGGTTTCC : 51917

   101 : roCysAsnGlnPheGlyLysGlnGluProGlyLysAsnSerGluIleLeuSerGlyLeu{ :   120
         ||||||||||||||||||||||||||||||||:!!||||||||||||||| !!||||||{
         roCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeuProGlyLeu{
 51916 : CCTGTAACCAATTTGGAAAGCAAGAACCAGGAGAGAACTCGGAGATCCTTCCAGGGCTG{ : 51857

   121 : Ly}  >>>> Target Intron 3 >>>>  {s}TyrValArgProGlyGlyGlyPheV :   129
         ||}            460 bp           {|}|||||||||||||||||||||!:!|
         Ly}++                         ++{s}TyrValArgProGlyGlyGlyTyrV
 51856 : AA}gt.........................ag{G}TATGTCCGTCCAGGGGGAGGATATG : 51370

   130 : alProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValP :   149
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         alProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysValP
 51369 : TACCTAATTTCCAGCTTTTTGAGAAAGGAGATGTGAATGGGGAAAAAGAACAGAAAGTCT : 51310

   150 : heThrPheLeuLys  >>>> Target Intron 4 >>>>  AsnSerCysProProTh :   159
         ||||||||||||||           1101 bp           :!!|||||||||! ! !
         heThrPheLeuLys++                         ++HisSerCysProHisPr
 51309 : TCACCTTCTTGAAGgt.........................agCACTCCTGTCCTCACCC : 50179

   160 : rSerAspLeuLeuGlySerProLysGlnLeuPheTrpGluProMetLysValHisAspIl :   179
         !|||!!::!!|||||||||  !|||!!.:!!! !|||||||||!!:||||||||||||||
         oSerGluIleLeuGlySerLeuLysHisIleSerTrpGluProIleLysValHisAspIl
 50178 : CTCTGAGATTTTAGGCTCATTAAAACATATATCCTGGGAACCTATAAAGGTCCATGACAT : 50119

   180 : eArgTrpAsnPheGluLysPheLeuValGlyProAspGlyValProValMetArgTrpPh :   199
         ||||||||||||||||||||||||||||||||||:!!|||||||||||||||||||||||
         eArgTrpAsnPheGluLysPheLeuValGlyProAsnGlyValProValMetArgTrpPh
 50118 : CCGCTGGAATTTTGAAAAGTTCCTGGTGGGGCCTAATGGAGTCCCCGTCATGCGCTGGTT : 50059

   200 : eHisArgAlaSerValSerThrValLysSerAspIleLeuGluTyrLeuLysGlnPhe :   218
         |||||||||| !!||||||.!!||||||||||||||||||! !||||||:!!||||||
         eHisArgAlaProValSerAlaValLysSerAspIleLeuAlaTyrLeuGlnGlnPhe
 50058 : CCATCGGGCCCCAGTCAGTGCGGTCAAGTCGGATATCCTGGCATACCTGCAGCAGTTC : 50000

vulgar: SPP00000855_2.0 0 218 . gi|398920810|gb|JH767833.1|:subseq(2505870,139497) 57602 49999 - 920 M 29 87 5 0 2 I 0 2552 3 0 2 M 51 153 S 0 1 5 0 2 I 0 2828 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 456 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1097 3 0 2 M 65 195
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-28
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	gene	50000	57602	920	-	.	gene_id 1 ; sequence SPP00000855_2.0 ; gene_orientation +
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	cds	57516	57602	.	-	.	
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	exon	57516	57602	.	-	.	insertions 0 ; deletions 0
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice5	57514	57515	.	-	.	intron_id 1 ; splice_site "GT"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	intron	54960	57515	.	-	.	intron_id 1
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice3	54960	54961	.	-	.	intron_id 0 ; splice_site "AG"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	cds	54806	54959	.	-	.	
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	exon	54806	54959	.	-	.	insertions 0 ; deletions 0
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice5	54804	54805	.	-	.	intron_id 2 ; splice_site "GT"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	intron	51974	54805	.	-	.	intron_id 2
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice3	51974	51975	.	-	.	intron_id 1 ; splice_site "AG"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	cds	51856	51973	.	-	.	
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	exon	51856	51973	.	-	.	insertions 0 ; deletions 0
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice5	51854	51855	.	-	.	intron_id 3 ; splice_site "GT"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	intron	51396	51855	.	-	.	intron_id 3
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice3	51396	51397	.	-	.	intron_id 2 ; splice_site "AG"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	cds	51296	51395	.	-	.	
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	exon	51296	51395	.	-	.	insertions 0 ; deletions 0
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice5	51294	51295	.	-	.	intron_id 4 ; splice_site "GT"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	intron	50195	51295	.	-	.	intron_id 4
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	splice3	50195	50196	.	-	.	intron_id 3 ; splice_site "AG"
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	cds	50000	50194	.	-	.	
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	exon	50000	50194	.	-	.	insertions 0 ; deletions 0
gi|398920810|gb|JH767833.1|:subseq(2505870,139497)	exonerate:protein2genome:local	similarity	50000	57602	920	-	.	alignment_id 1 ; Query SPP00000855_2.0 ; Align 57603 1 87 ; Align 54960 30 153 ; Align 51972 82 114 ; Align 51395 121 99 ; Align 50195 154 195
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
