Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/SP.GPx4.1.fa.x.fa -t 3B.fastasub.dir/5.SP.GPx4.1.fa.x.fa]
Hostname: [ws116055]

C4 Alignment:
------------
         Query: SPP00000026_2.0 # Protein # Glutathione peroxidase 4 (GPx4) # Human (Homo sapiens)
        Target: gi|398920950|gb|JH767828.1|:subseq(4736044,101042) Ceratotherium simum simum unplaced genomic scaffold scaffold00106, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 890
   Query range: 0 -> 196
  Target range: 52098 -> 50002

     1 : MetSerLeuGlyArgLeuCysArgLeuLeuLysProAlaLeuLeuCysGlyAlaLeuAla :    20
         |||||||||.!!|||||| !!|||||||||||||||||||||||||||   ...   ...
         MetSerLeuSerArgLeuSerArgLeuLeuLysProAlaLeuLeuCysUnkUnkUnkUnk
 52098 : ATGAGCTTGAGCCGCCTGAGCCGCCTGCTGAAGCCGGCGCTGCTGTGCNNNNNNNNNNNN : 52041

    21 : AlaProGlyLeuAlaGlyThrMet  >>>> Target Intron 1 >>>>  CysAlaS :    31
         ...         ...   ...               975 bp           ||||||:
         UnkUnkUnkUnkUnkUnkUnkUnk--                         ++CysAlaA
 52040 : NNNNNNNNNNNNNNNNNNNNNNNNnn.........................agTGTGCAG : 51033

    32 : erArgAspAspTrpArgCysAlaArgSerMetHisGluPheSerAlaLysAspIleAspG :    51
         !!||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         laArgAspAspTrpArgCysAlaArgSerMetHisGluPheSerAlaLysAspIleAspG
 51032 : CCCGCGACGACTGGCGCTGTGCGCGCTCCATGCACGAGTTCTCAGCCAAGGACATCGACG : 50973

    52 : lyHisMetValAsnLeuAspLysTyr{Ar}  >>>> Target Intron 2 >>>>  { :    60
         ||||||||||||||||||||||||||{||}            83 bp            {
         lyHisMetValAsnLeuAspLysTyr{Ar}++                         ++{
 50972 : GGCACATGGTTAACCTGGACAAGTAT{CG}gt.........................ag{ : 50861

    61 : g}GlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLysThrGluValAsnT :    80
         |}||||||||||||||||||||||||||||||||||||   |||||||||!  |||||||
         g}GlyPheValCysIleValThrAsnValAlaSerGln***GlyLysThrAlaValAsnT
 50860 : G}GGCTTCGTGTGCATCGTCACCAACGTGGCCTCCCAATGAGGCAAAACGGCCGTAAACT : 50803

    81 : yrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeuArgIleLeuAlaP :   100
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         yrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeuArgIleLeuAlaP
 50802 : ACACTCAGCTCGTCGACCTGCACGCCCGATACGCTGAGTGCGGTTTACGCATCCTGGCCT : 50743

   101 : heProCysAsnGlnPheGlyLysGln  >>>> Target Intron 3 >>>>  GluPr :   110
         ||||||||||||||||||||!:!|||            89 bp            |||||
         heProCysAsnGlnPheGlyArgGln++                         ++GluPr
 50742 : TCCCCTGCAACCAGTTCGGGAGGCAGgt.........................agGAGCC : 50624

   111 : oGlySerAsnGluGluIleLysGluPheAlaAlaGlyTyrAsnValLysPheAspMetPh :   130
         ||||||||||! !|||||||||||||||||||||||||||||||||||||||||||||||
         oGlySerAsnAlaGluIleLysGluPheAlaAlaGlyTyrAsnValLysPheAspMetPh
 50623 : AGGGTCTAACGCGGAGATCAAAGAGTTCGCCGCGGGCTACAACGTCAAATTCGATATGTT : 50564

   131 : eSerLysIleCysValAsnGlyAspAspAlaHisProLeuTrpLysTrpMetLysIleGl :   150
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||  !||
         eSerLysIleCysValAsnGlyAspAspAlaHisProLeuTrpLysTrpMetLysAlaGl
 50563 : CAGCAAGATCTGCGTGAACGGGGACGACGCGCACCCGCTGTGGAAGTGGATGAAGGCTCA : 50504

   151 : nProLysGlyLysGlyIleLeuGly{As}  >>>> Target Intron 4 >>>>  {n :   159
         ||||||||||!:!|||!!:||||||{||}            98 bp            {|
         nProLysGlyArgGlyMetLeuGly{As}++                         ++{n
 50503 : GCCTAAGGGGAGGGGCATGCTGGGA{AA}gt.........................ag{C : 50377

   160 : }AlaIleLysTrpAsnPheThrLys  >>>> Target Intron 5 >>>>  PheLeu :   169
         }||||||||||||||||||||||||            191 bp           ||||||
         }AlaIleLysTrpAsnPheThrLys++                         ++PheLeu
 50376 : }GCCATCAAGTGGAACTTCACCAAGgt.........................agTTCCTG : 50158

   170 : IleAspLysAsnGlyCysValValLysArgTyrGlyProMetGluGluProLeu  >>>> :   188
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
         IleAspLysAsnGlyCysValValLysArgTyrGlyProMetGluGluProLeu++    
 50157 : ATCGACAAGAACGGCTGCGTGGTGAAGCGCTACGGCCCCATGGAGGAGCCCCTGgt.... : 50099

   189 :  Target Intron 6 >>>>  ValIleGluLysAspLeuProHisTyr :   196
               72 bp            |||||||||||||||||||||  !|||
                              ++ValIleGluLysAspLeuProCysTyr
 50098 : .....................agGTGATAGAGAAGGACCTGCCCTGCTAC : 50003

vulgar: SPP00000026_2.0 0 196 . gi|398920950|gb|JH767828.1|:subseq(4736044,101042) 52098 50002 - 890 M 28 84 5 0 2 I 0 971 3 0 2 M 31 93 S 0 2 5 0 2 I 0 79 3 0 2 S 1 1 M 48 144 5 0 2 I 0 85 3 0 2 M 50 150 S 0 2 5 0 2 I 0 94 3 0 2 S 1 1 M 8 24 5 0 2 I 0 187 3 0 2 M 20 60 5 0 2 I 0 68 3 0 2 M 9 27
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	gene	50003	52098	890	-	.	gene_id 1 ; sequence SPP00000026_2.0 ; gene_orientation +
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	cds	52015	52098	.	-	.	
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	exon	52015	52098	.	-	.	insertions 0 ; deletions 0
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice5	52013	52014	.	-	.	intron_id 1 ; splice_site "NN"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	intron	51040	52014	.	-	.	intron_id 1
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice3	51040	51041	.	-	.	intron_id 0 ; splice_site "AG"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	cds	50945	51039	.	-	.	
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	exon	50945	51039	.	-	.	insertions 0 ; deletions 0
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice5	50943	50944	.	-	.	intron_id 2 ; splice_site "GT"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	intron	50862	50944	.	-	.	intron_id 2
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice3	50862	50863	.	-	.	intron_id 1 ; splice_site "AG"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	cds	50717	50861	.	-	.	
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	exon	50717	50861	.	-	.	insertions 0 ; deletions 0
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice5	50715	50716	.	-	.	intron_id 3 ; splice_site "GT"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	intron	50628	50716	.	-	.	intron_id 3
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice3	50628	50629	.	-	.	intron_id 2 ; splice_site "AG"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	cds	50476	50627	.	-	.	
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	exon	50476	50627	.	-	.	insertions 0 ; deletions 0
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice5	50474	50475	.	-	.	intron_id 4 ; splice_site "GT"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	intron	50378	50475	.	-	.	intron_id 4
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice3	50378	50379	.	-	.	intron_id 3 ; splice_site "AG"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	cds	50353	50377	.	-	.	
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	exon	50353	50377	.	-	.	insertions 0 ; deletions 0
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice5	50351	50352	.	-	.	intron_id 5 ; splice_site "GT"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	intron	50162	50352	.	-	.	intron_id 5
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice3	50162	50163	.	-	.	intron_id 4 ; splice_site "AG"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	cds	50102	50161	.	-	.	
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	exon	50102	50161	.	-	.	insertions 0 ; deletions 0
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice5	50100	50101	.	-	.	intron_id 6 ; splice_site "GT"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	intron	50030	50101	.	-	.	intron_id 6
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	splice3	50030	50031	.	-	.	intron_id 5 ; splice_site "AG"
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	cds	50003	50029	.	-	.	
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	exon	50003	50029	.	-	.	insertions 0 ; deletions 0
gi|398920950|gb|JH767828.1|:subseq(4736044,101042)	exonerate:protein2genome:local	similarity	50003	52098	890	-	.	alignment_id 1 ; Query SPP00000026_2.0 ; Align 52099 1 84 ; Align 51040 29 93 ; Align 50861 61 144 ; Align 50628 109 150 ; Align 50377 160 24 ; Align 50162 168 60 ; Align 50030 188 27
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
