Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/SP.TR3.1.fa.x.fa -t 3B.fastasub.dir/2.SP.TR3.1.fa.x.fa]
Hostname: [ws116063]

C4 Alignment:
------------
         Query: SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete
        Target: gi|398920009|gb|JH767883.1|:subseq(584820,178088) Ceratotherium simum simum unplaced genomic scaffold scaffold00161, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2864
   Query range: 101 -> 754
  Target range: 15971 -> 128088

    102 : ProGlyArgAlaArgSerGluSerGluThrLeuGluArgSerProProGlnSerProG :    121
          ||||||||||||||||||..! !!  ! !!  !!  |||||||||  !    !!|||!
          ProGlyArgAlaArgSerSerArgProProAlaAlaArgSerProGlyCysProProA
  15972 : CCAGGCCGCGCTCGCTCGTCGCGCCCGCCGGCGGCCCGCTCACCCGGATGCCCTCCAG :  16029

    122 : lyProGlyLysAlaGlyAspAlaProAsnArgArgSerGlyHisValArgGlyAlaAr :    140
          .!||||||   |||  !  !  !|||  !||||||!!!  !  !! !! ! !!..!  
          laProGlyProAlaProProHisProCysArgArgThrProCysGlyProArgCysSe
  16030 : CACCCGGACCCGCTCCTCCTCATCCATGCCGAAGGACACCCTGCGGCCCTCGCTGCTC :  16086

    141 : gValLeuSerPro{Pr}  >>>> Target Intron 1 >>>>  {o}GlyArgArg :    148
          !  !! !!!!|||{  }           33893 bp          { } !!||||||
          rArgCysCysPro{Un}+-                         --{k}UnkArgArg
  16087 : TCGGTGCTGCCCA{TG}gc.........................nn{N}NGGCGCCGG :  50003

    149 : AlaArgLeuSerSerProGlyProSerArgSerSer<->GluAlaArgGluGluLeuA :    167
          ||||||||||||||||||||| !!.!!|||||||||   |||||||||||||||||||
          AlaArgLeuSerSerProGlyAlaGlyArgSerSerAlaGluAlaArgGluGluLeuA
  50004 : GCCCGCCTGTCGTCCCCCGGGGCCGGCCGCTCGTCCGCCGAGGCCCGCGAGGAGCTGC :  50063

    168 : rgArgHisLeuValGlyLeuIleGluArgSerArgValValIlePheSerLysSerTy :    186
          |||||!.!|||:!!|||||||||||| !!|||||||||:!!|||||||||||||||||
          rgArgArgLeuLeuGlyLeuIleGluGlySerArgValMetIlePheSerLysSerTy
  50064 : GGCGCCGCCTCCTGGGCCTGATCGAGGGCAGCCGAGTGATGATCTTCAGCAAGAGCTA :  50120

    187 : rCysProHisSerThrArg  >>>> Target Intron 2 >>>>  ValLysGluL :    196
          |||||||||||||.!!|||           30990 bp          ||||||||||
          rCysProHisSerAlaArg++                         ++ValLysGluL
  50121 : CTGTCCGCACAGCGCGCGGgt.........................agGTTAAAGAAC :  81140

    197 : euPheSerSerLeuGlyValGluCysAsnValLeuGluLeuAspGlnVal{A}  >>> :    213
          |||||||||||||||||||||||||||||:!!|||||||||||||||:!!{|}     
          euPheSerSerLeuGlyValGluCysAsnIleLeuGluLeuAspGlnIle{A}++   
  81141 : TCTTTTCTTCCTTGGGAGTTGAATGCAATATCTTGGAACTTGATCAAATT{G}gt... :  81194

    214 : > Target Intron 3 >>>>  {sp}AspGlyAlaArgValGlnGluValLeuSer :    223
                1005 bp           {||}|||||||||!!!||||||||||||||||||
                                ++{sp}AspGlyAlaSerValGlnGluValLeuSer
  81195 : ......................ag{AT}GATGGGGCCAGTGTTCAAGAAGTGCTGTCA :  82226

    224 : GluIleThrAsnGlnLysThrValProAsnIlePheValAsnLysValHisValGlyG :    243
          |||||||||!:!|||!:!|||||||||||||||||||||||||||||||||:!!||||
          GluIleThrSerGlnArgThrValProAsnIlePheValAsnLysValHisMetGlyG
  82227 : GAGATCACCAGTCAGAGAACTGTGCCCAATATTTTCGTGAATAAAGTGCATATGGGTG :  82286

    244 : lyCysAspGlnThrPheGln  >>>> Target Intron 4 >>>>  AlaTyrGln :    252
          ||||||||!:!|||||||||           1736 bp           |||||||||
          lyCysAspArgThrPheGln++                         ++AlaTyrGln
  82287 : GATGTGACCGAACTTTCCAGgt.........................agGCATATCAG :  84049

    253 : SerGlyLeuLeuGlnLysLeuLeuGlnGluAspLeuAlaTyrAspTyrAspLeuIleI :    272
          |||||||||||||||||||||||||||! !|||! !|||||||||||||||||||||:
          SerGlyLeuLeuGlnLysLeuLeuGlnGlyAspSerAlaTyrAspTyrAspLeuIleV
  84050 : AGTGGTTTATTACAGAAGCTCCTTCAGGGAGATTCAGCATATGACTATGACCTCATTG :  84109

    273 : leIleGlyGlyGlySerGlyGlyLeuSerCysAlaLys  >>>> Target Intron :    285
          !!||||||||||||||||||||||||:!!||||||:!!           1051 bp  
          alIleGlyGlyGlySerGlyGlyLeuAlaCysAlaGln++                  
  84110 : TCATTGGTGGCGGTTCTGGTGGCCTTGCGTGTGCTCAGgt.................. :  84150

    286 :  5 >>>>  GluAlaAlaIleLeuGlyLysLysValMetValLeuAspPheValValP :    301
                   |||||||||||||||||||||||||||||||||||||||||||||||||
                 ++GluAlaAlaIleLeuGlyLysLysValMetValLeuAspPheValValP
  84151 : .......agGAAGCTGCCATTTTGGGAAAGAAAGTTATGGTGCTAGACTTTGTGGTCC :  85247

    302 : roSerProGlnGlyThrSerTrp{G}  >>>> Target Intron 6 >>>>  {ly :    309
          |||||||||||||||||||||||{|}           1650 bp           {||
          roSerProGlnGlyThrSerTrp{G}++                         ++{ly
  85248 : CGTCCCCTCAGGGCACGTCCTGG{G}gt.........................ag{GT :  86922

    310 : }LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAla :    328
          }|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          }LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAla
  86923 : }CTTGGTGGTACTTGTGTAAATGTAGGCTGTATTCCTAAGAAATTGATGCATCAGGCT :  86978

    329 : AlaLeuLeuGlyGlnAlaLeuCysAspSerArgLysPheGlyTrpGluTyrAsnGlnG :    348
          |||||||||||||||||||||  !||||||||||||||||||||||||||||||||||
          AlaLeuLeuGlyGlnAlaLeuValAspSerArgLysPheGlyTrpGluTyrAsnGlnG
  86979 : GCCCTTTTGGGGCAGGCATTAGTTGACTCAAGGAAATTTGGCTGGGAGTATAATCAAC :  87038

    349 : ln{V}  >>>> Target Intron 7 >>>>  {al}ArgHisAsnTrpGluThrMe :    356
          ||{|}           5898 bp           {||}!:!|||||||||||||||||
          ln{V}++                         ++{al}LysHisAsnTrpGluThrMe
  87039 : AA{G}gt.........................ag{TC}AAGCACAACTGGGAGACCAT :  92960

    357 : tThrLysAlaIleGlnAsnHisIleSerSerLeuAsnTrpGlyTyrArgLeuSerLeu :    375
          ||||:!!||||||||||||||||||.!!||||||||||||||||||||||||||||||
          tThrGluAlaIleGlnAsnHisIleGlySerLeuAsnTrpGlyTyrArgLeuSerLeu
  92961 : GACAGAAGCGATTCAAAACCACATTGGATCTCTAAATTGGGGCTACAGGTTGTCTTTG :  93017

    376 : ArgGluLysAlaValAlaTyrValAsnSerTyrGlyGluPheValGluHisHisLysI :    395
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ArgGluLysAlaValAlaTyrValAsnSerTyrGlyGluPheValGluHisHisLysI
  93018 : AGGGAGAAGGCCGTGGCCTATGTCAATTCCTATGGAGAATTTGTCGAACATCATAAAA :  93077

    396 : leLys  >>>> Target Intron 8 >>>>  AlaThrAsnLysLysGlyGlnGlu :    404
          |||||           1806 bp           |||||||||!:!||||||||||||
          leLys++                         ++AlaThrAsnArgLysGlyGlnGlu
  93078 : TAAAGgt.........................agGCAACCAATAGAAAAGGACAGGAA :  94910

    405 : ThrTyrTyrThrAlaAlaGlnPheValIleAlaThrGlyGluArgProArgTyrLeuG :    424
          |||! !||||||||||||:!!|||||||||||||||||||||||||||||||||||||
          ThrCysTyrThrAlaAlaLysPheValIleAlaThrGlyGluArgProArgTyrLeuG
  94911 : ACCTGTTATACTGCTGCAAAATTTGTCATAGCAACAGGTGAGAGGCCACGGTATTTAG :  94970

    425 : lyIleGlnGlyAspLysGluTyrCysIleThr{Se}  >>>> Target Intron 9 :    435
          ||||||||||||||||||||||||||||||||{||}            826 bp    
          lyIleGlnGlyAspLysGluTyrCysIleThr{Se}++                    
  94971 : GAATCCAAGGAGATAAAGAATACTGCATTACT{AG}gt.................... :  95007

    436 :  >>>>  {r}AspAspLeuPheSerLeuProTyrCysProGlyLysThrLeuValVal :    451
                 {|}||||||||||||||||||||||||||||||||||||||||||||||||
               ++{r}AspAspLeuPheSerLeuProTyrCysProGlyLysThrLeuValVal
  95008 : .....ag{T}GATGACCTTTTTTCTCTGCCTTATTGCCCTGGCAAAACCTTAGTAGTG :  95877

    452 : GlyAlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyPheGlyLeuAspV :    471
          ||||||||||||||||||||||||||||||||||||||||||||| !!||||||||||
          GlyAlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyValGlyLeuAspV
  95878 : GGTGCATCTTACGTTGCTCTGGAATGTGCAGGATTTCTTGCTGGCGTTGGCTTAGATG :  95937

    472 : alThrValMetValArgSerIleLeuLeuArgGlyPheAspGlnGluMetAlaGluLy :    490
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alThrValMetValArgSerIleLeuLeuArgGlyPheAspGlnGluMetAlaGluLy
  95938 : TCACAGTTATGGTGCGCTCAATCCTTCTTCGTGGCTTTGATCAAGAAATGGCAGAGAA :  95994

    491 : sValGlySerTyrMetGluGlnHisGlyValLysPheLeuArgLysPheIleProVal :    509
          |||||||||||||||||||||||||||||||||||||||||||||||||:!:||||||
          sValGlySerTyrMetGluGlnHisGlyValLysPheLeuArgLysPheValProVal
  95995 : AGTGGGTTCCTACATGGAACAACATGGTGTTAAGTTCTTAAGAAAATTTGTGCCTGTG :  96051

    510 : Met  >>>> Target Intron 10 >>>>  ValGlnGlnLeuGluLysGlySerP :    519
          |||            1467 bp           |||||||||||||||||||||||||
          Met++                          ++ValGlnGlnLeuGluLysGlySerP
  96052 : ATGgt..........................agGTTCAACAGTTGGAGAAAGGTTCGC :  97548

    520 : roGlyLysLeuLysValLeuAlaLysSerThrGluGlyThrGluThrIleGluGlyVa :    538
          |||||||||||||||||:!!|||||||||||||||||| !!|||||||||||||||||
          roGlyLysLeuLysValValAlaLysSerThrGluGlyProGluThrIleGluGlyVa
  97549 : CTGGAAAGCTGAAAGTAGTGGCTAAATCCACTGAAGGACCAGAAACTATTGAAGGAGT :  97605

    539 : lTyrAsnThr  >>>> Target Intron 11 >>>>  ValLeuLeuAlaIleGly :    547
          ||||||||||            8139 bp           ||||||||||||||||||
          lTyrAsnThr++                          ++ValLeuLeuAlaIleGly
  97606 : ATATAACACAgt..........................agGTTTTGTTAGCAATTGGT : 105771

    548 : ArgAspSerCysThrArgLysIleGlyLeuGluLysIleGlyValLysIleAsnGlu{ :    567
          |||||||||||||||!:!|||||||||||||||||||||||||||||||||||||||{
          ArgAspSerCysThrLysLysIleGlyLeuGluLysIleGlyValLysIleAsnGlu{
 105772 : CGTGACTCCTGTACAAAGAAAATAGGCTTGGAGAAGATCGGTGTCAAAATCAATGAG{ : 105831

    568 : Ly}  >>>> Target Intron 12 >>>>  {s}SerGlyLysIleProValAsnA :    575
          ||}            572 bp            {|}|||||||||:!!||||||||||
          Ly}++                          ++{s}SerGlyLysValProValAsnA
 105832 : AA}gt..........................ag{G}AGTGGCAAAGTACCAGTAAATG : 106427

    576 : spValGluGlnThrAsnValProTyrValTyrAlaValGlyAspIleLeuGluAspLy :    594
          |||||||||||||||||||||||||||||||||||:!!||||||:!!||||||!  ||
          spValGluGlnThrAsnValProTyrValTyrAlaIleGlyAspValLeuGluGlyLy
 106428 : ATGTGGAGCAGACCAATGTGCCCTATGTTTACGCGATTGGGGACGTTCTGGAGGGGAA : 106484

    595 : sProGluLeuThrProValAlaIleGlnSerGlyLysLeuLeuAlaGlnArgLeuPhe :    613
          |! !||||||||||||||||||||||||:!!|||||||||||||||!:!|||||||||
          sLeuGluLeuThrProValAlaIleGlnAlaGlyLysLeuLeuAlaArgArgLeuPhe
 106485 : ACTTGAGCTCACTCCTGTCGCCATACAGGCGGGCAAGCTGCTGGCTCGAAGACTTTTT : 106541

    614 : GlyAlaSerLeuGluLys  >>>> Target Intron 13 >>>>  CysAspTyrI :    623
          |||!.! !!|||||||||            4512 bp           ||||||||||
          GlyGlyArgLeuGluLys+-                          ++CysAspTyrI
 106542 : GGGGGCCGTTTAGAAAAGgc..........................agTGTGATTATA : 111083

    624 : leAsnValProThrThrValPheThrProLeuGluTyrGlyCysCysGlyLeuSerGl :    642
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          leAsnValProThrThrValPheThrProLeuGluTyrGlyCysCysGlyLeuSerGl
 111084 : TTAATGTTCCAACTACAGTGTTTACTCCTTTGGAATATGGCTGCTGTGGATTATCTGA : 111140

    643 : uGluLysAlaIleGluValTyrLysLysGluAsnLeuGlu  >>>> Target Intr :    656
          ||||||||||||||||||||||||||||||||||||||||           13962 b
          uGluLysAlaIleGluValTyrLysLysGluAsnLeuGlu++                
 111141 : AGAGAAAGCTATTGAAGTGTATAAAAAGGAGAATCTAGAAgt................ : 111184

    657 : on 14 >>>>  IleTyrHisThrLeuPheTrpProLeuGluTrpThrValAlaGlyA :    671
          p           :!:|||||||||||||||||||||||||||||||||||||||||||
                    ++ValTyrHisThrLeuPheTrpProLeuGluTrpThrValAlaGlyA
 111185 : ..........agGTGTATCATACTTTGTTCTGGCCTCTTGAATGGACAGTCGCCGGCA : 125189

    672 : rgGluAsnAsnThrCysTyrAlaLysIleIleCysAsnLysPheAspHis  >>>> T :    688
          ||!!:||||||||||||||||||||||||||||||||||||||||||:!!        
          rgAspAsnAsnThrCysTyrAlaLysIleIleCysAsnLysPheAspAsn++      
 125190 : GAGACAACAATACTTGTTACGCAAAGATAATTTGCAATAAATTCGACAATgt...... : 125242

    689 : arget Intron 15 >>>>  AspArgValIleGlyPheHisIleLeuGlyProAsn :    699
              2445 bp           ||||||||||||||||||||||||||||||||||||
                              ++AspArgValIleGlyPheHisIleLeuGlyProAsn
 125243 : ....................agGATCGGGTGATAGGATTTCATATTCTTGGACCGAAT : 127718

    700 : AlaGlyGluValThrGlnGlyPheAlaAlaAlaMetLysCysGlyLeuThrLysGlnL :    719
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaGlyGluValThrGlnGlyPheAlaAlaAlaMetLysCysGlyLeuThrLysGlnL
 127719 : GCCGGTGAGGTTACCCAAGGATTTGCAGCTGCAATGAAATGTGGGCTCACAAAGCAGC : 127778

    720 : euLeuAspAspThrIleGlyIleHisProThrCysGlyGlu  >>>> Target Int :    733
          |||||||||||||||||||||||||||||||||||||||||            203 b
          euLeuAspAspThrIleGlyIleHisProThrCysGlyGlu++               
 127779 : TGCTCGATGACACCATTGGAATTCACCCCACATGTGGTGAGgt............... : 127822

    734 : ron 16 >>>>  ValPheThrThrLeuGluIleThrLysSerSerGlyLeuAspIle :    747
          p            |||||||||||||||||||||||||||||||||||||||||||||
                     ++ValPheThrThrLeuGluIleThrLysSerSerGlyLeuAspIle
 127823 : ...........agGTGTTCACAACGTTGGAAATCACAAAGTCCTCGGGACTGGACATC : 128065

    748 : ThrGlnLysGlyCysUnkGly :    754
          ||||||:!!||||||   |||
          ThrGlnGluGlyCys***Gly
 128066 : ACGCAGGAAGGCTGCTGAGGC : 128088

vulgar: SPP00000036_1.0 101 754 . gi|398920009|gb|JH767883.1|:subseq(584820,178088) 15971 128088 + 2864 M 43 129 S 0 2 5 0 2 I 0 33889 3 0 2 S 1 1 M 15 45 G 0 3 M 32 96 5 0 2 I 0 30986 3 0 2 M 20 60 S 0 1 5 0 2 I 0 1001 3 0 2 S 1 2 M 36 108 5 0 2 I 0 1732 3 0 2 M 35 105 5 0 2 I 0 1047 3 0 2 M 24 72 S 0 1 5 0 2 I 0 1646 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 5894 3 0 2 S 1 2 M 47 141 5 0 2 I 0 1802 3 0 2 M 38 114 S 0 2 5 0 2 I 0 822 3 0 2 S 1 1 M 75 225 5 0 2 I 0 1463 3 0 2 M 31 93 5 0 2 I 0 8135 3 0 2 M 25 75 S 0 2 5 0 2 I 0 568 3 0 2 S 1 1 M 52 156 5 0 2 I 0 4508 3 0 2 M 36 108 5 0 2 I 0 13958 3 0 2 M 32 96 5 0 2 I 0 2441 3 0 2 M 45 135 5 0 2 I 0 199 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	gene	15972	128088	2864	+	.	gene_id 1 ; sequence SPP00000036_1.0 ; gene_orientation +
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	15972	16102	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	15972	16102	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	16103	16104	.	+	.	intron_id 1 ; splice_site "GC"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	16103	49995	.	+	.	intron_id 1
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	49994	49995	.	+	.	intron_id 0 ; splice_site "NN"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	49996	50140	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	49996	50140	.	+	.	insertions 3 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	50141	50142	.	+	.	intron_id 2 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	50141	81130	.	+	.	intron_id 2
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	81129	81130	.	+	.	intron_id 1 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	81131	81191	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	81131	81191	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	81192	81193	.	+	.	intron_id 3 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	81192	82196	.	+	.	intron_id 3
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	82195	82196	.	+	.	intron_id 2 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	82197	82306	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	82197	82306	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	82307	82308	.	+	.	intron_id 4 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	82307	84042	.	+	.	intron_id 4
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	84041	84042	.	+	.	intron_id 3 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	84043	84147	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	84043	84147	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	84148	84149	.	+	.	intron_id 5 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	84148	85198	.	+	.	intron_id 5
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	85197	85198	.	+	.	intron_id 4 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	85199	85271	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	85199	85271	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	85272	85273	.	+	.	intron_id 6 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	85272	86921	.	+	.	intron_id 6
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	86920	86921	.	+	.	intron_id 5 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	86922	87041	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	86922	87041	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	87042	87043	.	+	.	intron_id 7 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	87042	92939	.	+	.	intron_id 7
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	92938	92939	.	+	.	intron_id 6 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	92940	93082	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	92940	93082	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	93083	93084	.	+	.	intron_id 8 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	93083	94888	.	+	.	intron_id 8
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	94887	94888	.	+	.	intron_id 7 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	94889	95004	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	94889	95004	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	95005	95006	.	+	.	intron_id 9 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	95005	95830	.	+	.	intron_id 9
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	95829	95830	.	+	.	intron_id 8 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	95831	96056	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	95831	96056	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	96057	96058	.	+	.	intron_id 10 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	96057	97523	.	+	.	intron_id 10
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	97522	97523	.	+	.	intron_id 9 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	97524	97616	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	97524	97616	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	97617	97618	.	+	.	intron_id 11 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	97617	105755	.	+	.	intron_id 11
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	105754	105755	.	+	.	intron_id 10 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	105756	105832	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	105756	105832	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	105833	105834	.	+	.	intron_id 12 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	105833	106404	.	+	.	intron_id 12
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	106403	106404	.	+	.	intron_id 11 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	106405	106561	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	106405	106561	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	106562	106563	.	+	.	intron_id 13 ; splice_site "GC"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	106562	111073	.	+	.	intron_id 13
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	111072	111073	.	+	.	intron_id 12 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	111074	111181	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	111074	111181	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	111182	111183	.	+	.	intron_id 14 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	111182	125143	.	+	.	intron_id 14
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	125142	125143	.	+	.	intron_id 13 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	125144	125239	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	125144	125239	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	125240	125241	.	+	.	intron_id 15 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	125240	127684	.	+	.	intron_id 15
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	127683	127684	.	+	.	intron_id 14 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	127685	127819	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	127685	127819	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice5	127820	127821	.	+	.	intron_id 16 ; splice_site "GT"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	intron	127820	128022	.	+	.	intron_id 16
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	splice3	128021	128022	.	+	.	intron_id 15 ; splice_site "AG"
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	cds	128023	128088	.	+	.	
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	exon	128023	128088	.	+	.	insertions 0 ; deletions 0
gi|398920009|gb|JH767883.1|:subseq(584820,178088)	exonerate:protein2genome:local	similarity	15972	128088	2864	+	.	alignment_id 1 ; Query SPP00000036_1.0 ; Align 15972 102 129 ; Align 49997 146 45 ; Align 50045 161 96 ; Align 81131 193 60 ; Align 82199 214 108 ; Align 84043 250 105 ; Align 85199 285 72 ; Align 86924 310 117 ; Align 92942 350 141 ; Align 94889 397 114 ; Align 95832 436 225 ; Align 97524 511 93 ; Align 105756 542 75 ; Align 106406 568 156 ; Align 111074 620 108 ; Align 125144 656 96 ; Align 127685 688 135 ; Align 128023 733 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
