Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/SP.TR1.1.fa.x.fa -t 3B.fastasub.dir/2.SP.TR1.1.fa.x.fa]
Hostname: [ws116055]

C4 Alignment:
------------
         Query: SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete
        Target: gi|398925635|gb|JH767723.1|:subseq(28309073,138507) Ceratotherium simum simum unplaced genomic scaffold scaffold00001, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2374
   Query range: 0 -> 499
  Target range: 47368 -> 88507

     1 : MetAsnGlyProGluAspLeuProLysSerTyrAspTyrAspLeuIleIleIleGlyGly :    20
         ||||||||| !!||||||||||||:!!|||||||||||||||||||||||||||||||||
         MetAsnGlySerGluAspLeuProGluSerTyrAspTyrAspLeuIleIleIleGlyGly
 47369 : ATGAATGGCTCTGAGGATCTTCCCGAGTCCTATGACTATGACCTCATCATCATTGGAGGG : 47426

    21 : GlySerGlyGlyLeuAlaAlaAlaLys  >>>> Target Intron 1 >>>>  GluA :    31
         |||||||||||||||||||||||||||           2520 bp           ||||
         GlySerGlyGlyLeuAlaAlaAlaLys+-                         ++GluA
 47427 : GGCTCAGGAGGACTGGCAGCTGCTAAGgc.........................agGAGG : 49979

    32 : laAlaGlnTyrGlyLysLysValMetValLeuAspPheValThrProThrProLeuGlyT :    51
         |||||:!!|||..!||||||||||||||||||||||||||||||||||||||||||||||
         laAlaLysTyrAsnLysLysValMetValLeuAspPheValThrProThrProLeuGlyT
 49980 : CAGCCAAATATAACAAGAAGGTGATGGTCCTGGATTTTGTCACTCCAACCCCTCTTGGAA : 50039

    52 : hrArgTrp{G}  >>>> Target Intron 2 >>>>  {ly}LeuGlyGlyThrCysV :    60
         ||||||||{|}           2054 bp           {||}||||||||||||||||
         hrArgTrp{G}++                         ++{ly}LeuGlyGlyThrCysV
 50040 : CTAGATGG{G}gt.........................ag{GT}CTCGGAGGAACATGCG : 52120

    61 : alAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaL :    80
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         alAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaL
 52121 : TGAATGTGGGTTGCATACCTAAAAAACTGATGCACCAAGCGGCTTTGTTAGGGCAAGCCC : 52180

    81 : euGlnAspSerArgAsnTyrGlyTrpLysValGluGluThr{V}  >>>> Target In :    94
         ||!:!|||||||||||||||||||||!!.||||||||||||{|}           7620 
         euArgAspSerArgAsnTyrGlyTrpAsnValGluGluThr{V}++              
 52181 : TACGAGACTCTCGAAACTACGGATGGAACGTCGAGGAGACG{G}gt.............. : 52225

    95 : tron 3 >>>>  {al}LysHisAspTrpAspArgMetIleGluAlaValGlnAsnHisI :   109
         bp           {||}||||||||||||!!:!:!|||! !|||||||||||||||||||
                    ++{al}LysHisAspTrpGluLysMetThrGluAlaValGlnAsnHisI
 52226 : ...........ag{TT}AAACATGACTGGGAAAAAATGACAGAAGCTGTGCAGAATCACA : 59887

   110 : leGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysLysValValTyrGluA :   129
         ||||||||||||||||||||||||||||||||||||||||||||||||||..!|||||||
         leGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysLysValThrTyrGluA
 59888 : TTGGCTCTCTGAACTGGGGTTACCGCGTAGCTCTGCGGGAGAAGAAAGTCACCTATGAGA : 59947

   130 : snAlaTyrGlyGlnPheIleGlyProHisArgIleLys  >>>> Target Intron 4 :   142
         |||||||||||||||||:!!||||||||||||:!!|||            673 bp    
         snAlaTyrGlyGlnPheValGlyProHisArgValLys++                    
 59948 : ACGCATATGGGCAGTTTGTTGGTCCTCATAGGGTTAAGgt.................... : 59988

   143 :  >>>>  AlaThrAsnAsnLysGlyLysGluLysIleTyrSerAlaGluArgPheLeuIl :   159
                .!!|||||||||!:!|||||||||!!.||||||!!!|||||||||||||||||
              ++ThrThrAsnAsnArgGlyLysGluAsnIleTyrThrAlaGluArgPheLeuIl
 59989 : .....agACAACAAATAACAGAGGCAAAGAAAACATTTATACAGCAGAGAGATTTCTCAT : 60710

   160 : eAlaThrGlyGluArgProArgTyrLeuGlyIleProGlyAspLysGluTyrCysIleSe :   179
         ||||||||||||||||||||||||||||! !|||||||||||||||||||||||||||||
         eAlaThrGlyGluArgProArgTyrLeuAspIleProGlyAspLysGluTyrCysIleSe
 60711 : TGCCACTGGTGAAAGACCACGTTATTTAGATATCCCTGGTGACAAAGAATACTGCATCAG : 60770

   180 : r{Se}  >>>> Target Intron 5 >>>>  {r}AspAspLeuPheSerLeuProTy :   188
         |{||}           1409 bp           {|}|||||||||||||||||||||||
         r{Se}++                         ++{r}AspAspLeuPheSerLeuProTy
 60771 : C{AG}gt.........................ag{T}GATGATCTTTTCTCCTTACCTTA : 62206

   189 : rCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeuGluCysAlaGlyPh :   208
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         rCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeuGluCysAlaGlyPh
 62207 : TTGCCCGGGTAAGACCCTGGTGGTCGGAGCATCCTATGTTGCTTTGGAATGTGCTGGATT : 62266

   209 : eLeuAlaGlyIleGlyLeuAspValThrValMetValArgSerIleLeuLeuArgGlyPh :   228
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         eLeuAlaGlyIleGlyLeuAspValThrValMetValArgSerIleLeuLeuArgGlyPh
 62267 : TCTTGCTGGCATTGGTTTAGATGTCACTGTTATGGTACGGTCCATTCTCCTTAGAGGATT : 62326

   229 : eAspGlnAspMetAlaAsnLysIleGlyGluHisMetGluGluHisGlyIleLysPheIl :   248
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         eAspGlnAspMetAlaAsnLysIleGlyGluHisMetGluGluHisGlyIleLysPheIl
 62327 : TGACCAGGACATGGCCAACAAAATTGGTGAACATATGGAAGAACATGGTATCAAGTTTAT : 62386

   249 : eArgGlnPheValProIleLys  >>>> Target Intron 6 >>>>  ValGluGln :   258
         |!:!||||||||||||||||||           2698 bp           |||||||||
         eLysGlnPheValProIleLys++                         ++ValGluGln
 62387 : AAAACAGTTTGTACCAATAAAAgt.........................agGTTGAACAA : 65114

   259 : IleGluAlaGlyThrProGlyArgLeuArgValValAlaGlnSerThrAsnSerGluGlu :   278
         ||||||||||||||||||||||||||||||||||||||||||||||||!...!!!!::!!
         IleGluAlaGlyThrProGlyArgLeuArgValValAlaGlnSerThrThrGlyAspLys
 65115 : ATTGAAGCAGGGACACCAGGTCGACTCAGAGTGGTAGCTCAGTCCACCACGGGTGACAAA : 65174

   279 : IleIleGluGlyGluTyrAsnThr  >>>> Target Intron 7 >>>>  ValMetL :   289
         ! !||||||||||||!:!||||||            852 bp           |||:!!|
         ThrIleGluGlyGluPheAsnThr++                         ++ValLeuL
 65175 : ACCATCGAAGGAGAGTTTAACACGgt.........................agGTGTTGC : 66059

   290 : euAlaIleGlyArgAspAlaCysThrArgLysIleGlyLeuGluThrValGlyValLysI :   309
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         euAlaIleGlyArgAspAlaCysThrArgLysIleGlyLeuGluThrValGlyValLysI
 66060 : TGGCAATAGGAAGAGATGCTTGCACAAGAAAAATTGGCTTAGAAACCGTGGGGGTAAAGA : 66119

   310 : leAsnGlu{Ly}  >>>> Target Intron 8 >>>>  {s}ThrGlyLysIleProV :   318
         ||||||||{||}           1251 bp           {|}||||||||||||||||
         leAsnGlu{Ly}++                         ++{s}ThrGlyLysIleProV
 66120 : TAAATGAA{AA}gt.........................ag{G}ACTGGAAAAATACCTG : 67397

   319 : alThrAspGluGluGlnThrAsnValProTyrIleTyrAlaIleGlyAspIleLeuGluA :   338
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||!
         alThrAspGluGluGlnThrAsnValProTyrIleTyrAlaIleGlyAspIleLeuGluG
 67398 : TCACAGATGAAGAGCAGACCAACGTACCTTACATCTATGCCATTGGTGACATATTGGAGG : 67457

   339 : spLysValGluLeuThrProValAlaIleGlnAlaGlyArgLeuLeuAlaGlnArgLeuT :   358
           |||:!!||||||||||||||||||||||||||||||||||||||||||||||||||||
         lyLysLeuGluLeuThrProValAlaIleGlnAlaGlyArgLeuLeuAlaGlnArgLeuT
 67458 : GAAAGCTGGAGCTCACCCCCGTAGCCATCCAGGCAGGAAGATTGCTGGCTCAGAGGCTTT : 67517

   359 : yrAlaGlySerThrValLys  >>>> Target Intron 9 >>>>  CysAspTyrGl :   368
         ||!.!|||||||||||||||           6251 bp           |||||||||||
         yrGlyGlySerThrValLys++                         ++CysAspTyrGl
 67518 : ATGGTGGCTCCACTGTCAAGgt.........................agTGTGACTATGA : 73798

   369 : uAsnValProThrThrValPheThrProLeuGluTyrGlyAlaCysGlyLeuSerGluGl :   388
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         uAsnValProThrThrValPheThrProLeuGluTyrGlyAlaCysGlyLeuSerGluGl
 73799 : AAATGTTCCAACAACTGTCTTTACTCCTTTGGAATATGGTGCTTGTGGTCTTTCTGAAGA : 73858

   389 : uLysAlaValGluLysPheGlyGluGluAsnIleGlu  >>>> Target Intron 10 :   401
         |||||||||||||||||||||||||||||||||||||            2269 bp    
         uLysAlaValGluLysPheGlyGluGluAsnIleGlu++                     
 73859 : GAAAGCTGTGGAGAAATTTGGGGAAGAAAATATTGAGgt..................... : 73899

   402 :  >>>>  ValTyrHisSerTyrPheTrpProLeuGluTrpThrIleProSerArgAspAs :   418
                ||||||||||||||||||||||||||||||||||||:!!||||||||||||||
              ++ValTyrHisSerTyrPheTrpProLeuGluTrpThrValProSerArgAspAs
 73900 : .....agGTTTACCATAGTTACTTTTGGCCGTTGGAATGGACAGTTCCATCAAGAGATAA : 76217

   419 : nAsnLysCysTyrAlaLysIleIleCysAsnThrLysAspAsn  >>>> Target Int :   433
         ||||||||||||||||||||||:!!||||||! !|||||||||            3010 
         nAsnLysCysTyrAlaLysIleValCysAsnIleLysAspAsn++               
 76218 : CAACAAATGTTACGCAAAAATAGTCTGTAATATCAAAGACAATgt............... : 76264

   434 : ron 11 >>>>  GluArgValValGlyPheHisValLeuGlyProAsnAlaGlyGluVa :   448
         bp           |||||||||||||||||||||||||||||||||||||||||||||||
                    ++GluArgValValGlyPheHisValLeuGlyProAsnAlaGlyGluVa
 76265 : ...........agGAGCGTGTTGTAGGCTTTCACGTACTGGGTCCAAATGCTGGAGAAGT : 79317

   449 : lThrGlnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerTh :   468
         ||||||||||||||||||||||:!!||||||||||||||||||:!!||||||||||||||
         lThrGlnGlyPheAlaAlaAlaIleLysCysGlyLeuThrLysGluGlnLeuAspSerTh
 79318 : TACACAGGGCTTTGCAGCTGCAATCAAGTGTGGACTGACCAAAGAGCAGCTGGACAGCAC : 79377

   469 : rIleGlyIleHisProValCysAlaGlu  >>>> Target Intron 12 >>>>  Va :   478
         ||||||||||||||||||||||||||||            9035 bp           :!
         rIleGlyIleHisProValCysAlaGlu++                          ++Il
 79378 : CATCGGCATCCACCCCGTCTGTGCAGAGgt..........................agAT : 88442

   479 : lPheThrThrLeuSerValThrLysArgSerGlyAlaSerIleLeuGlnAlaGlyCysUn :   498
         !|||||||||||||||||||||||||||||||||!.!..!||||||||||||||||||  
         ePheThrThrLeuSerValThrLysArgSerGlyGlyAspIleLeuGlnAlaGlyCys**
 88443 : ATTCACGACACTGTCGGTGACCAAGCGCTCTGGAGGAGACATCCTCCAGGCTGGCTGCTG : 88502

   499 : kGly :   499
          |||
         *Gly
 88503 : AGGT : 88507

vulgar: SPP00000034_1.0 0 499 . gi|398925635|gb|JH767723.1|:subseq(28309073,138507) 47368 88507 + 2374 M 29 87 5 0 2 I 0 2516 3 0 2 M 24 72 S 0 1 5 0 2 I 0 2050 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 7616 3 0 2 S 1 2 M 47 141 5 0 2 I 0 669 3 0 2 M 38 114 S 0 2 5 0 2 I 0 1405 3 0 2 S 1 1 M 75 225 5 0 2 I 0 2694 3 0 2 M 31 93 5 0 2 I 0 848 3 0 2 M 25 75 S 0 2 5 0 2 I 0 1247 3 0 2 S 1 1 M 52 156 5 0 2 I 0 6247 3 0 2 M 36 108 5 0 2 I 0 2265 3 0 2 M 32 96 5 0 2 I 0 3006 3 0 2 M 45 135 5 0 2 I 0 9031 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	gene	47369	88507	2374	+	.	gene_id 1 ; sequence SPP00000034_1.0 ; gene_orientation +
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	47369	47455	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	47369	47455	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	47456	47457	.	+	.	intron_id 1 ; splice_site "GC"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	47456	49975	.	+	.	intron_id 1
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	49974	49975	.	+	.	intron_id 0 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	49976	50048	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	49976	50048	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	50049	50050	.	+	.	intron_id 2 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	50049	52102	.	+	.	intron_id 2
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	52101	52102	.	+	.	intron_id 1 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	52103	52222	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	52103	52222	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	52223	52224	.	+	.	intron_id 3 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	52223	59842	.	+	.	intron_id 3
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	59841	59842	.	+	.	intron_id 2 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	59843	59985	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	59843	59985	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	59986	59987	.	+	.	intron_id 4 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	59986	60658	.	+	.	intron_id 4
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	60657	60658	.	+	.	intron_id 3 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	60659	60774	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	60659	60774	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	60775	60776	.	+	.	intron_id 5 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	60775	62183	.	+	.	intron_id 5
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	62182	62183	.	+	.	intron_id 4 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	62184	62409	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	62184	62409	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	62410	62411	.	+	.	intron_id 6 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	62410	65107	.	+	.	intron_id 6
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	65106	65107	.	+	.	intron_id 5 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	65108	65200	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	65108	65200	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	65201	65202	.	+	.	intron_id 7 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	65201	66052	.	+	.	intron_id 7
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	66051	66052	.	+	.	intron_id 6 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	66053	66129	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	66053	66129	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	66130	66131	.	+	.	intron_id 8 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	66130	67380	.	+	.	intron_id 8
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	67379	67380	.	+	.	intron_id 7 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	67381	67537	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	67381	67537	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	67538	67539	.	+	.	intron_id 9 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	67538	73788	.	+	.	intron_id 9
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	73787	73788	.	+	.	intron_id 8 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	73789	73896	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	73789	73896	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	73897	73898	.	+	.	intron_id 10 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	73897	76165	.	+	.	intron_id 10
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	76164	76165	.	+	.	intron_id 9 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	76166	76261	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	76166	76261	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	76262	76263	.	+	.	intron_id 11 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	76262	79271	.	+	.	intron_id 11
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	79270	79271	.	+	.	intron_id 10 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	79272	79406	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	79272	79406	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice5	79407	79408	.	+	.	intron_id 12 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	intron	79407	88441	.	+	.	intron_id 12
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	splice3	88440	88441	.	+	.	intron_id 11 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	cds	88442	88507	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	exon	88442	88507	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28309073,138507)	exonerate:protein2genome:local	similarity	47369	88507	2374	+	.	alignment_id 1 ; Query SPP00000034_1.0 ; Align 47369 1 87 ; Align 49976 30 72 ; Align 52105 55 117 ; Align 59845 95 141 ; Align 60659 142 114 ; Align 62185 181 225 ; Align 65108 256 93 ; Align 66053 287 75 ; Align 67382 313 156 ; Align 73789 365 108 ; Align 76166 401 96 ; Align 79272 433 135 ; Align 88442 478 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
