Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/MM.TR1.1.fa.x.fa -t 3B.fastasub.dir/2.MM.TR1.1.fa.x.fa]
Hostname: [ws101159]

C4 Alignment:
------------
         Query: SPP00001595_2.0 # Protein # Thioredoxin reductase 1 (TR1) # Mouse (Mus musculus)
        Target: gi|398925635|gb|JH767723.1|:subseq(28304402,143178) Ceratotherium simum simum unplaced genomic scaffold scaffold00001, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2629
   Query range: 0 -> 616
  Target range: 49999 -> 93178

     1 : MetProValAspAspCysTrpLeuTyrPheProAlaSerArgGlyArgThrPheValGln :    20
         ||||||||||||!!:! !||||||! !!!.|||||||||!.!! !||| !!|||||||||
         MetProValAspGluTyrTrpLeuCysLeuProAlaSerHisValArgProPheValGln
 50000 : ATGCCAGTTGATGAATACTGGCTGTGTTTACCAGCCTCTCACGTTAGACCTTTTGTGCAG : 50057

    21 : ThrValTrpValAlaProThrCysProAsnCysCysTrpPheProGlyPheLeuProPro :    40
         |||:!! ! |||!.!! !:!!||||||:!!|||||||||||||||||| !!||||||  !
         ThrIleArgValValGlnSerCysProHisCysCysTrpPheProGlyValLeuProVal
 50058 : ACGATCAGAGTGGTGCAGTCTTGTCCCCATTGTTGCTGGTTTCCAGGTGTTCTCCCTGTA : 50117

    41 : ValProArgProProHisValProArgValLeuLeuArgGlyProArgGlyAlaValLeu :    60
         ||||||..!||| !!  !||||||  !:!!|||! !||||||  !!.!.!!|||! !! !
         ValProGluProSerCysValProAlaMetLeuProArgGlySerHisSerAlaGluPro
 50118 : GTCCCTGAGCCATCGTGTGTACCTGCCATGCTGCCAAGGGGCAGCCACAGTGCCGAGCCG : 50177

    61 : ProAlaSerArgProSerLysThrLeuProSerSerSerGlnThrProCysProThrAsp :    80
         ||| !! !!! ! !!|||!  .!!! !|||||||||||||||..! !!! ! !!.!!|||
         ProProProProSerSerThrAlaProProSerSerSerGlnValSerTyrSerAlaAsp
 50178 : CCTCCTCCACCTTCCTCCACTGCACCCCCTTCCTCATCCCAAGTGTCCTATTCTGCTGAC : 50237

    81 : ProCysIleCysProProProSerThrProAspSerArgGlnGluLysAsnThrGlnSer :   100
         |||     !|||! ! !!||| !!||| !!|||..!|||||||||||||||..!!:!!!!
         ProLysHisCysLeuSerProProThrSerAspAspArgGlnGluLysAsnValArgCys
 50238 : CCTAAGCACTGCCTTTCGCCCCCTACATCTGATGATAGGCAGGAGAAAAATGTGCGATGT : 50297

   101 : GluLeu  >>>> Target Intron 1 >>>>  ProAsnLysLysGlyGlnLeuGlnL :   111
         ! !|||           1698 bp            !! !!:!!:!!|||::!|||||||
         GlyLeu++                         ++AlaTyrGlnGluGlyArgLeuGlnL
 50298 : GGGCTGgt.........................agGCTTATCAGGAGGGCAGACTTCAAA : 52028

   112 : ysLeuProThrMetAsnGlySerLysAspProProGlySerTyrAspPheAspLeuIleI :   131
         |||||! !! !||||||||||||:!!|||! !|||! !|||||||||!:!||||||||||
         ysLeuLeuLysMetAsnGlySerGluAspLeuProGluSerTyrAspTyrAspLeuIleI
 52029 : AGCTCCTGAAAATGAATGGCTCTGAGGATCTTCCCGAGTCCTATGACTATGACCTCATCA : 52088

   132 : leIleGlyGlyGlySerGlyGlyLeuAlaAlaAlaLysAlaArgLeu  >>>> Target :   147
         |||||||||||||||||||||||||||||||||||||||||||||||           25
         leIleGlyGlyGlySerGlyGlyLeuAlaAlaAlaLysAlaArgLeu++           
 52089 : TCATTGGAGGGGGCTCAGGAGGACTGGCAGCTGCTAAGGCAAGGCTCgt........... : 52138

   148 :  Intron 2 >>>>  SerAlaAlaLysPheAspLysLysValLeuValLeuAspPheVa :   161
         11 bp           ..!|||||||||!:!:!!|||||||||:!!||||||||||||||
                       ++GluAlaAlaLysTyrAsnLysLysValMetValLeuAspPheVa
 52139 : ..............agGAGGCAGCCAAATATAACAAGAAGGTGATGGTCCTGGATTTTGT : 54689

   162 : lThrProThrProLeuGlyThrArgTrp{G}  >>>> Target Intron 3 >>>>   :   171
         ||||||||||||||||||||||||||||{|}           2054 bp           
         lThrProThrProLeuGlyThrArgTrp{G}++                         ++
 54690 : CACTCCAACCCCTCTTGGAACTAGATGG{G}gt.........................ag : 56772

   172 : {ly}LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAl :   190
         {||}||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         {ly}LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAl
 56773 : {GT}CTCGGAGGAACATGCGTGAATGTGGGTTGCATACCTAAAAAACTGATGCACCAAGC : 56830

   191 : aAlaLeuLeuGlyGlnAlaLeuLysAspSerArgAsnTyrGlyTrpLysValGluAspTh :   210
         ||||||||||||||||||||||::!|||||||||||||||||||||!!.||||||!!:||
         aAlaLeuLeuGlyGlnAlaLeuArgAspSerArgAsnTyrGlyTrpAsnValGluGluTh
 56831 : GGCTTTGTTAGGGCAAGCCCTACGAGACTCTCGAAACTACGGATGGAACGTCGAGGAGAC : 56890

   211 : r{V}  >>>> Target Intron 4 >>>>  {al}LysHisAspTrpGluLysMetTh :   219
         |{|}           7620 bp           {||}|||||||||||||||||||||||
         r{V}++                         ++{al}LysHisAspTrpGluLysMetTh
 56891 : G{G}gt.........................ag{TT}AAACATGACTGGGAAAAAATGAC : 64537

   220 : rGluSerValGlnSerHisIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGl :   239
         ||||:!!||||||!:!||||||||||||||||||||||||||||||||||||||||||||
         rGluAlaValGlnAsnHisIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGl
 64538 : AGAAGCTGTGCAGAATCACATTGGCTCTCTGAACTGGGGTTACCGCGTAGCTCTGCGGGA : 64597

   240 : uLysLysValValTyrGluAsnAlaTyrGlyArgPheIleGlyProHisArgIleVal   :   259
         ||||||||||..!||||||||||||||||||!:!|||:!!||||||||||||:!!  !  
         uLysLysValThrTyrGluAsnAlaTyrGlyGlnPheValGlyProHisArgValLys++
 64598 : GAAGAAAGTCACCTATGAGAACGCATATGGGCAGTTTGTTGGTCCTCATAGGGTTAAGgt : 64657

   260 : >>>> Target Intron 5 >>>>  AlaThrAsnAsnLysGlyLysGluLysIleTyr :   269
                   673 bp           .!!|||||||||!:!|||||||||!!.||||||
                                  ++ThrThrAsnAsnArgGlyLysGluAsnIleTyr
 64658 : .........................agACAACAAATAACAGAGGCAAAGAAAACATTTAT : 65360

   270 : SerAlaGluArgPheLeuIleAlaThrGlyGluArgProArgTyrLeuGlyIleProGly :   289
         !!!|||||||||||||||||||||||||||||||||||||||||||||! !|||||||||
         ThrAlaGluArgPheLeuIleAlaThrGlyGluArgProArgTyrLeuAspIleProGly
 65361 : ACAGCAGAGAGATTTCTCATTGCCACTGGTGAAAGACCACGTTATTTAGATATCCCTGGT : 65420

   290 : AspLysGluTyrCysIleSer{Se}  >>>> Target Intron 6 >>>>  {r}Asp :   298
         |||||||||||||||||||||{||}           1409 bp           {|}|||
         AspLysGluTyrCysIleSer{Se}++                         ++{r}Asp
 65421 : GACAAAGAATACTGCATCAGC{AG}gt.........................ag{T}GAT : 66856

   299 : AspLeuPheSerLeuProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrVal :   318
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AspLeuPheSerLeuProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrVal
 66857 : GATCTTTTCTCCTTACCTTATTGCCCGGGTAAGACCCTGGTGGTCGGAGCATCCTATGTT : 66916

   319 : AlaLeuGluCysAlaGlyPheLeuAlaGlyIleGlyLeuAspValThrValMetValArg :   338
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AlaLeuGluCysAlaGlyPheLeuAlaGlyIleGlyLeuAspValThrValMetValArg
 66917 : GCTTTGGAATGTGCTGGATTTCTTGCTGGCATTGGTTTAGATGTCACTGTTATGGTACGG : 66976

   339 : SerIleLeuLeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMetGlu :   358
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         SerIleLeuLeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMetGlu
 66977 : TCCATTCTCCTTAGAGGATTTGACCAGGACATGGCCAACAAAATTGGTGAACATATGGAA : 67036

   359 : GluHisGlyIleLysPheIleArgGlnPheValProThrLys  >>>> Target Intr :   373
         |||||||||||||||||||||!:!||||||||||||! !|||           2698 bp
         GluHisGlyIleLysPheIleLysGlnPheValProIleLys++                
 67037 : GAACATGGTATCAAGTTTATAAAACAGTTTGTACCAATAAAAgt................ : 67083

   374 : on 7 >>>>  IleGluGlnIleGluAlaGlyThrProGlyArgLeuArgValThrAlaG :   389
                    :!!|||||||||||||||||||||||||||||||||||||||..!||||
                  ++ValGluGlnIleGluAlaGlyThrProGlyArgLeuArgValValAlaG
 67084 : .........agGTTGAACAAATTGAAGCAGGGACACCAGGTCGACTCAGAGTGGTAGCTC : 69827

   390 : lnSerThrAsnSerGluGluThrIleGluGlyGluPheAsnThr  >>>> Target In :   404
         ||||||||!...!!!!::!!||||||||||||||||||||||||            852 
         lnSerThrThrGlyAspLysThrIleGluGlyGluPheAsnThr++              
 69828 : AGTCCACCACGGGTGACAAAACCATCGAAGGAGAGTTTAACACGgt.............. : 69874

   405 : tron 8 >>>>  ValLeuLeuAlaValGlyArgAspSerCysThrArgThrIleGlyLe :   419
         bp           ||||||||||||:!!|||||||||:!!|||||||||! !||||||||
                    ++ValLeuLeuAlaIleGlyArgAspAlaCysThrArgLysIleGlyLe
 69875 : ...........agGTGTTGCTGGCAATAGGAAGAGATGCTTGCACAAGAAAAATTGGCTT : 70769

   420 : uGluThrValGlyValLysIleAsnGlu{Ly}  >>>> Target Intron 9 >>>>  :   429
         ||||||||||||||||||||||||||||{||}           1251 bp          
         uGluThrValGlyValLysIleAsnGlu{Ly}++                         +
 70770 : AGAAACCGTGGGGGTAAAGATAAATGAA{AA}gt.........................a : 72050

   430 :  {s}ThrGlyLysIleProValThrAspGluGluGlnThrAsnValProTyrIleTyrAl :   448
          {|}||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         +{s}ThrGlyLysIleProValThrAspGluGluGlnThrAsnValProTyrIleTyrAl
 72051 : g{G}ACTGGAAAAATACCTGTCACAGATGAAGAGCAGACCAACGTACCTTACATCTATGC : 72107

   449 : aIleGlyAspIleLeuGluGlyLysLeuGluLeuThrProValAlaIleGlnAlaGlyAr :   468
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         aIleGlyAspIleLeuGluGlyLysLeuGluLeuThrProValAlaIleGlnAlaGlyAr
 72108 : CATTGGTGACATATTGGAGGGAAAGCTGGAGCTCACCCCCGTAGCCATCCAGGCAGGAAG : 72167

   469 : gLeuLeuAlaGlnArgLeuTyrGlyGlySerAsnValLys  >>>> Target Intron :   482
         |||||||||||||||||||||||||||||||!.!||||||            6251 bp 
         gLeuLeuAlaGlnArgLeuTyrGlyGlySerThrValLys++                  
 72168 : ATTGCTGGCTCAGAGGCTTTATGGTGGCTCCACTGTCAAGgt.................. : 72211

   483 :  10 >>>>  CysAspTyrAspAsnValProThrThrValPheThrProLeuGluTyrGl :   498
                   |||||||||!!:||||||||||||||||||||||||||||||||||||||
                 ++CysAspTyrGluAsnValProThrThrValPheThrProLeuGluTyrGl
 72212 : ........agTGTGACTATGAAAATGTTCCAACAACTGTCTTTACTCCTTTGGAATATGG : 78508

   499 : yCysCysGlyLeuSerGluGluLysAlaValGluLysPheGlyGluGluAsnIleGlu   :   518
         |..!||||||||||||||||||||||||||||||||||||||||||||||||||||||  
         yAlaCysGlyLeuSerGluGluLysAlaValGluLysPheGlyGluGluAsnIleGlu++
 78509 : TGCTTGTGGTCTTTCTGAAGAGAAAGCTGTGGAGAAATTTGGGGAAGAAAATATTGAGgt : 78568

   519 : >>>> Target Intron 11 >>>>  ValTyrHisSerPhePheTrpProLeuGluTr :   528
                   2269 bp           ||||||||||||!:!|||||||||||||||||
                                   ++ValTyrHisSerTyrPheTrpProLeuGluTr
 78569 : ..........................agGTTTACCATAGTTACTTTTGGCCGTTGGAATG : 80867

   529 : pThrValProSerArgAspAsnAsnLysCysTyrAlaLysIleIleCysAsnLeuLysAs :   548
         |||||||||||||||||||||||||||||||||||||||||||:!!||||||:!!|||||
         pThrValProSerArgAspAsnAsnLysCysTyrAlaLysIleValCysAsnIleLysAs
 80868 : GACAGTTCCATCAAGAGATAACAACAAATGTTACGCAAAAATAGTCTGTAATATCAAAGA : 80927

   549 : pAsp  >>>> Target Intron 12 >>>>  GluArgValValGlyPheHisValLe :   558
         |:!!            3010 bp           ||||||||||||||||||||||||||
         pAsn++                          ++GluArgValValGlyPheHisValLe
 80928 : CAATgt..........................agGAGCGTGTTGTAGGCTTTCACGTACT : 83967

   559 : uGlyProAsnAlaGlyGluValThrGlnGlyPheAlaAlaAlaLeuLysCysGlyLeuTh :   578
         |||||||||||||||||||||||||||||||||||||||||||:!!||||||||||||||
         uGlyProAsnAlaGlyGluValThrGlnGlyPheAlaAlaAlaIleLysCysGlyLeuTh
 83968 : GGGTCCAAATGCTGGAGAAGTTACACAGGGCTTTGCAGCTGCAATCAAGTGTGGACTGAC : 84027

   579 : rLysGlnGlnLeuAspSerThrIleGlyIleHisProValCysAlaGlu  >>>> Targ :   595
         ||||:!!||||||||||||||||||||||||||||||||||||||||||           
         rLysGluGlnLeuAspSerThrIleGlyIleHisProValCysAlaGlu++         
 84028 : CAAAGAGCAGCTGGACAGCACCATCGGCATCCACCCCGTCTGTGCAGAGgt......... : 84080

   596 : et Intron 13 >>>>  IlePheThrThrLeuSerValThrLysArgSerGlyGlyAs :   608
          9035 bp           |||||||||||||||||||||||||||||||||||||||||
                          ++IlePheThrThrLeuSerValThrLysArgSerGlyGlyAs
 84081 : .................agATATTCACGACACTGTCGGTGACCAAGCGCTCTGGAGGAGA : 93152

   609 : pIleLeuGlnSerGlyCysUnkGly :   616
         ||||||||||:!!||||||   |||
         pIleLeuGlnAlaGlyCys***Gly
 93153 : CATCCTCCAGGCTGGCTGCTGAGGT : 93178

vulgar: SPP00001595_2.0 0 616 . gi|398925635|gb|JH767723.1|:subseq(28304402,143178) 49999 93178 + 2629 M 102 306 5 0 2 I 0 1694 3 0 2 M 44 132 5 0 2 I 0 2507 3 0 2 M 24 72 S 0 1 5 0 2 I 0 2050 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 7616 3 0 2 S 1 2 M 47 141 5 0 2 I 0 669 3 0 2 M 38 114 S 0 2 5 0 2 I 0 1405 3 0 2 S 1 1 M 75 225 5 0 2 I 0 2694 3 0 2 M 31 93 5 0 2 I 0 848 3 0 2 M 25 75 S 0 2 5 0 2 I 0 1247 3 0 2 S 1 1 M 52 156 5 0 2 I 0 6247 3 0 2 M 36 108 5 0 2 I 0 2265 3 0 2 M 32 96 5 0 2 I 0 3006 3 0 2 M 45 135 5 0 2 I 0 9031 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	gene	50000	93178	2629	+	.	gene_id 1 ; sequence SPP00001595_2.0 ; gene_orientation +
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	50000	50305	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	50000	50305	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	50306	50307	.	+	.	intron_id 1 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	50306	52003	.	+	.	intron_id 1
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	52002	52003	.	+	.	intron_id 0 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	52004	52135	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	52004	52135	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	52136	52137	.	+	.	intron_id 2 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	52136	54646	.	+	.	intron_id 2
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	54645	54646	.	+	.	intron_id 1 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	54647	54719	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	54647	54719	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	54720	54721	.	+	.	intron_id 3 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	54720	56773	.	+	.	intron_id 3
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	56772	56773	.	+	.	intron_id 2 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	56774	56893	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	56774	56893	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	56894	56895	.	+	.	intron_id 4 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	56894	64513	.	+	.	intron_id 4
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	64512	64513	.	+	.	intron_id 3 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	64514	64656	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	64514	64656	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	64657	64658	.	+	.	intron_id 5 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	64657	65329	.	+	.	intron_id 5
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	65328	65329	.	+	.	intron_id 4 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	65330	65445	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	65330	65445	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	65446	65447	.	+	.	intron_id 6 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	65446	66854	.	+	.	intron_id 6
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	66853	66854	.	+	.	intron_id 5 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	66855	67080	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	66855	67080	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	67081	67082	.	+	.	intron_id 7 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	67081	69778	.	+	.	intron_id 7
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	69777	69778	.	+	.	intron_id 6 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	69779	69871	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	69779	69871	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	69872	69873	.	+	.	intron_id 8 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	69872	70723	.	+	.	intron_id 8
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	70722	70723	.	+	.	intron_id 7 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	70724	70800	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	70724	70800	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	70801	70802	.	+	.	intron_id 9 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	70801	72051	.	+	.	intron_id 9
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	72050	72051	.	+	.	intron_id 8 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	72052	72208	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	72052	72208	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	72209	72210	.	+	.	intron_id 10 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	72209	78459	.	+	.	intron_id 10
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	78458	78459	.	+	.	intron_id 9 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	78460	78567	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	78460	78567	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	78568	78569	.	+	.	intron_id 11 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	78568	80836	.	+	.	intron_id 11
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	80835	80836	.	+	.	intron_id 10 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	80837	80932	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	80837	80932	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	80933	80934	.	+	.	intron_id 12 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	80933	83942	.	+	.	intron_id 12
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	83941	83942	.	+	.	intron_id 11 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	83943	84077	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	83943	84077	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice5	84078	84079	.	+	.	intron_id 13 ; splice_site "GT"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	intron	84078	93112	.	+	.	intron_id 13
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	splice3	93111	93112	.	+	.	intron_id 12 ; splice_site "AG"
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	cds	93113	93178	.	+	.	
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	exon	93113	93178	.	+	.	insertions 0 ; deletions 0
gi|398925635|gb|JH767723.1|:subseq(28304402,143178)	exonerate:protein2genome:local	similarity	50000	93178	2629	+	.	alignment_id 1 ; Query SPP00001595_2.0 ; Align 50000 1 306 ; Align 52004 103 132 ; Align 54647 147 72 ; Align 56776 172 117 ; Align 64516 212 141 ; Align 65330 259 114 ; Align 66856 298 225 ; Align 69779 373 93 ; Align 70724 404 75 ; Align 72053 430 156 ; Align 78460 482 108 ; Align 80837 518 96 ; Align 83943 550 135 ; Align 93113 595 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
