Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/MM.GPx3.1.fa.x.fa -t 3B.fastasub.dir/12.MM.GPx3.1.fa.x.fa]
Hostname: [ws101153]

C4 Alignment:
------------
         Query: SPP00001548_2.0 # Protein # Glutathione peroxidase 3 (GPx3) # Mouse (Mus musculus)
        Target: gi|398923363|gb|JH767748.1|:subseq(26114167,102492) Ceratotherium simum simum unplaced genomic scaffold scaffold00026, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 914
   Query range: 0 -> 190
  Target range: 52492 -> 49999

     1 : PheGlnThrAspCysHisGlyGlyMetSerGlyThrIleTyrGluTyrGlyAlaLeuThr :    20
         ||||||||||||||||||  !|||:!!|||||||||||||||!!:|||||||||||||||
         PheGlnThrAspCysHisProGlyValSerGlyThrIleTyrAspTyrGlyAlaLeuThr
 52492 : TTCCAGACGGACTGCCATCCTGGGGTGAGTGGCACCATCTATGATTATGGAGCCCTCACC : 52435

    21 : IleAspGlyGluGluTyrIleProPheLysGlnTyrAlaGlyLysTyrIleLeuPheVal :    40
         |||||||||:!!||||||||||||||||||||||||||||||||||||||||||||||||
         IleAspGlyGlnGluTyrIleProPheLysGlnTyrAlaGlyLysTyrIleLeuPheVal
 52434 : ATCGATGGGCAAGAGTACATCCCCTTTAAGCAGTATGCTGGCAAATACATCCTCTTCGTC : 52375

    41 : AsnValAlaSerTyrUnkGlyLeuThrAspGlnTyrLeu{G}  >>>> Target Intr :    54
         |||||||||||||||   |||||||||! !||||||:!!{|}           1041 bp
         AsnValAlaSerTyr***GlyLeuThrGlyGlnTyrVal{G}++                
 52374 : AACGTGGCCAGCTACTGAGGCTTGACAGGCCAGTACGTT{G}gt................ : 52330

    55 : on 1 >>>>  {lu}LeuAsnAlaLeuGlnGluGluLeuGlyProPheGlyLeuValIle :    69
                    {||}||||||||||||||||||||||||!.!||||||||||||||||||
                  ++{lu}LeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLeuValIle
 52329 : .........ag{AA}CTGAATGCACTACAGGAAGAGCTTGCACCATTTGGTCTGGTCATT : 51247

    70 : LeuGlyPheProSerAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeu :    89
         ||||||||||||||||||||||||||||||||||||||||||!!:||||||||||||! !
         LeuGlyPheProSerAsnGlnPheGlyLysGlnGluProGlyAspAsnSerGluIlePro
 51246 : CTGGGCTTCCCCAGCAACCAATTCGGAAAACAGGAACCAGGAGACAACTCGGAGATCCCA : 51187

    90 : ProSerLeu{Ly}  >>>> Target Intron 2 >>>>  {s}TyrValArgProGly :    98
         ! !!!!|||{||}            451 bp           {|}|||||||||||||||
         LeuThrLeu{Ly}++                         ++{s}TyrValArgProGly
 51186 : CTCACCCTC{AA}gt.........................ag{G}TATGTCCGACCAGGT : 50709

    99 : GlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGlu :   118
          !!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ArgGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGlu
 50708 : AGGGGCTTCGTCCCCAATTTCCAACTCTTTGAGAAAGGCGATGTGAATGGGGAGAAAGAG : 50649

   119 : GlnLysPheTyrThrPheLeuLys  >>>> Target Intron 3 >>>>  AsnSerC :   129
         ||||||||||||||||||||||||            431 bp           |||||||
         GlnLysPheTyrThrPheLeuLys++                         ++AsnSerC
 50648 : CAGAAGTTCTACACATTCCTGAAGgt.........................agAACTCCT : 50185

   130 : ysProProThrAlaGluLeuLeuGlySerProGlyArgLeuPheTrpGluProMetLysI :   149
         |||||||||||:!!||||||||||||||||||||||||||||||||||||||||||||||
         ysProProThrSerGluLeuLeuGlySerProGlyArgLeuPheTrpGluProMetLysI
 50184 : GTCCTCCCACCTCGGAGCTCCTGGGCTCACCTGGCCGCCTCTTCTGGGAACCCATGAAGA : 50125

   150 : leHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyIleProValM :   169
         ||||||||||||||||||||||||||||||||||||||||||||||||||! !|||:!!|
         leHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyLysProIleM
 50124 : TCCATGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCAGACGGTAAACCCATCA : 50065

   170 : etArgTrpTyrHisArgThrThrValSerAsnValLysMetAspIleLeuSerTyrMetA :   189
         ||||||||||||||||||||||||||!:!!.!||||||||||||||||||:!!|||||||
         etArgTrpTyrHisArgThrThrValAsnThrValLysMetAspIleLeuAlaTyrMetA
 50064 : TGCGCTGGTACCACCGGACCACAGTCAACACTGTCAAGATGGACATCCTGGCCTACATGA : 50005

   190 : rgArg :   190
         |||||
         rgArg
 50004 : GGCGG : 50000

vulgar: SPP00001548_2.0 0 190 . gi|398923363|gb|JH767748.1|:subseq(26114167,102492) 52492 49999 - 914 M 53 159 S 0 1 5 0 2 I 0 1037 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 447 3 0 2 S 1 1 M 33 99 5 0 2 I 0 427 3 0 2 M 64 192
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-28
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	gene	50000	52492	914	-	.	gene_id 1 ; sequence SPP00001548_2.0 ; gene_orientation +
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	cds	52333	52492	.	-	.	
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	exon	52333	52492	.	-	.	insertions 0 ; deletions 0
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	splice5	52331	52332	.	-	.	intron_id 1 ; splice_site "GT"
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	intron	51292	52332	.	-	.	intron_id 1
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	splice3	51292	51293	.	-	.	intron_id 0 ; splice_site "AG"
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	cds	51174	51291	.	-	.	
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	exon	51174	51291	.	-	.	insertions 0 ; deletions 0
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	splice5	51172	51173	.	-	.	intron_id 2 ; splice_site "GT"
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	intron	50723	51173	.	-	.	intron_id 2
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	splice3	50723	50724	.	-	.	intron_id 1 ; splice_site "AG"
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	cds	50623	50722	.	-	.	
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	exon	50623	50722	.	-	.	insertions 0 ; deletions 0
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	splice5	50621	50622	.	-	.	intron_id 3 ; splice_site "GT"
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	intron	50192	50622	.	-	.	intron_id 3
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	splice3	50192	50193	.	-	.	intron_id 2 ; splice_site "AG"
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	cds	50000	50191	.	-	.	
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	exon	50000	50191	.	-	.	insertions 0 ; deletions 0
gi|398923363|gb|JH767748.1|:subseq(26114167,102492)	exonerate:protein2genome:local	similarity	50000	52492	914	-	.	alignment_id 1 ; Query SPP00001548_2.0 ; Align 52493 1 159 ; Align 51290 55 114 ; Align 50722 94 99 ; Align 50192 127 192
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
