Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/MM.GPx2.1.fa.x.fa -t 3B.fastasub.dir/10.MM.GPx2.1.fa.x.fa]
Hostname: [ws101153]

C4 Alignment:
------------
         Query: SPP00001547_2.0 # Protein # Glutathione peroxidase 2 (GPx2) # Mouse (Mus musculus)
        Target: gi|398923836|gb|JH767740.1|:subseq(11506680,103113) Ceratotherium simum simum unplaced genomic scaffold scaffold00018, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 956
   Query range: 0 -> 190
  Target range: 53113 -> 49999

     1 : MetAlaTyrIleAlaLysSerPheTyrAspLeuSerAlaValGlyLeuAspGlyGluLys :    20
         |||||||||||||||||||||||||||||||||||||||:!!.!!|||||||||||||||
         MetAlaTyrIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluLys
 53113 : ATGGCTTACATTGCTAAGTCCTTCTACGACCTTAGTGCTATCAGCCTGGATGGGGAGAAG : 53056

    21 : IleAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeuUnk :    40
         :!!||||||||||||||||||||||||||||||||||||||||||||||||||||||   
         ValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeu***
 53055 : GTAGATTTCAATACATTCCGAGGCAGGGCGGTGCTGATTGAGAACGTGGCCTCGCTCTGA : 52996

    41 : GlyThrThrThrArgAspTyrAsnGlnLeuAsnGluLeuGlnCysArgPheProArgArg :    60
         ||||||||||||||||||!:!!.!||||||||||||||||||||||||||||||||||||
         GlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPheProArgArg
 52995 : GGCACAACCACCCGGGACTTCACCCAGCTCAACGAGCTGCAATGCCGCTTTCCCAGGCGC : 52936

    61 : LeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln  >>>> Target Intr :    75
         ||||||||||||||||||||||||||||||||||||||||||           2544 bp
         LeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln++                
 52935 : TTGGTGGTTCTCGGCTTCCCGTGCAACCAGTTTGGACATCAGgt................ : 52889

    76 : on 1 >>>>  GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrValArgP :    91
                    |||||||||||||||||||||||||||||||||||||||||||||||||
                  ++GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrValArgP
 52888 : .........agGAGAACTGTCAGAATGAGGAGATCCTGAACAGTCTCAAGTACGTCCGCC : 50299

    92 : roGlyGlyGlyTyrGlnProThrPheSerLeuThrGlnLysCysAspValAsnGlyGlnA :   111
         |||||||||||!:!||||||||||||!!!|||..!|||||||||!!:|||||||||||||
         roGlyGlyGlyPheGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGlnA
 50298 : CTGGGGGTGGATTCCAGCCCACCTTTACCCTTGTCCAAAAGTGTGAGGTGAATGGTCAGA : 50239

   112 : snGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProP :   131
         ||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||||| 
         snGlnHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProV
 50238 : ACCAGCATCCTGTCTTCGCCTACCTGAAGGACAAGCTCCCCTACCCTTACGATGACCCAG : 50179

   132 : heSerLeuMetThrAspProLysLeuIleIleTrpSerProValArgArgSerAspValS :   151
         !!|||||||||||||||||||||!!!||||||||||||||||||||||||||||||||||
         alSerLeuMetThrAspProLysPheIleIleTrpSerProValArgArgSerAspValS
 50178 : TTTCCCTCATGACAGATCCCAAGTTCATTATTTGGAGCCCGGTGCGCCGCTCAGATGTGT : 50119

   152 : erTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerA :   171
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         erTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerA
 50118 : CCTGGAACTTTGAGAAGTTCCTTATTGGGCCGGAGGGGGAGCCCTTCCGACGCTACAGCC : 50059

   172 : rgSerPheGlnThrIleAsnIleGluProAspIleLysArgLeuLeuLysValAlaIle :   190
         ||!!!|||!  ||||||||||||||||||||||||||||||||||||||||||||||||
         rgThrPheProThrIleAsnIleGluProAspIleLysArgLeuLeuLysValAlaIle
 50058 : GCACCTTCCCCACCATCAACATTGAGCCTGACATCAAGCGCCTCCTCAAAGTTGCCATA : 50000

vulgar: SPP00001547_2.0 0 190 . gi|398923836|gb|JH767740.1|:subseq(11506680,103113) 53113 49999 - 956 M 74 222 5 0 2 I 0 2540 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-28
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398923836|gb|JH767740.1|:subseq(11506680,103113)	exonerate:protein2genome:local	gene	50000	53113	956	-	.	gene_id 1 ; sequence SPP00001547_2.0 ; gene_orientation +
gi|398923836|gb|JH767740.1|:subseq(11506680,103113)	exonerate:protein2genome:local	cds	52892	53113	.	-	.	
gi|398923836|gb|JH767740.1|:subseq(11506680,103113)	exonerate:protein2genome:local	exon	52892	53113	.	-	.	insertions 0 ; deletions 0
gi|398923836|gb|JH767740.1|:subseq(11506680,103113)	exonerate:protein2genome:local	splice5	52890	52891	.	-	.	intron_id 1 ; splice_site "GT"
gi|398923836|gb|JH767740.1|:subseq(11506680,103113)	exonerate:protein2genome:local	intron	50348	52891	.	-	.	intron_id 1
gi|398923836|gb|JH767740.1|:subseq(11506680,103113)	exonerate:protein2genome:local	splice3	50348	50349	.	-	.	intron_id 0 ; splice_site "AG"
gi|398923836|gb|JH767740.1|:subseq(11506680,103113)	exonerate:protein2genome:local	cds	50000	50347	.	-	.	
gi|398923836|gb|JH767740.1|:subseq(11506680,103113)	exonerate:protein2genome:local	exon	50000	50347	.	-	.	insertions 0 ; deletions 0
gi|398923836|gb|JH767740.1|:subseq(11506680,103113)	exonerate:protein2genome:local	similarity	50000	53113	956	-	.	alignment_id 1 ; Query SPP00001547_2.0 ; Align 53114 1 222 ; Align 50348 75 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
