Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/SP.SelN.1.fa.x.fa -t 3B.fastasub.dir/1.SP.SelN.1.fa.x.fa]
Hostname: [ws116063]

C4 Alignment:
------------
         Query: SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo sapiens # Complete
        Target: gi|398923877|gb|JH767739.1|:subseq(19974323,114100) Ceratotherium simum simum unplaced genomic scaffold scaffold00017, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2338
   Query range: 59 -> 590
  Target range: 49981 -> 64133

    60 : ArgGlnGluLeuAlaLeuLysThrLeuGlyThrAspGlyLeuPheLeuPheSerSerLeu :    79
         !:!||||||! !|||||||||.!!|||||||||!!:||||||||||||||||||||||||
         LysGlnGluSerAlaLeuLysAlaLeuGlyThrGluGlyLeuPheLeuPheSerSerLeu
 49982 : AAGCAGGAGTCAGCGCTGAAGGCCCTGGGGACAGAAGGCCTCTTTCTCTTTTCCTCCTTG : 50039

    80 : AspThrAspGlyAspMetTyrIleSerProGluGluPheLysProIleAlaGluLysLeu :    99
         ||||||||| !!||||||||||||||||||||||||||||||||||||||||||||||||
         AspThrAspArgAspMetTyrIleSerProGluGluPheLysProIleAlaGluLysLeu
 50040 : GACACTGACCGGGATATGTACATCAGCCCTGAGGAGTTCAAGCCCATCGCTGAGAAGCTG : 50099

   100 : Thr{G}  >>>> Target Intron 1 >>>>  {ly}SerCysSerValThrGlnThr :   108
         |||{!}            239 bp           {.!} !!  !  !..!  !....!!
         Thr{A}++                         ++{la}ProAspLeuThr***SerAla
 50100 : ACA{G}gt.........................ag{CG}CCAGACCTCACTTGAAGCGCT : 50365

   109 : GlyValGlnTrpCysSerHisSerSerLeuGlnProGlnLeuProTrpLeuAsnUnkSer :   128
         ..!  !:!!! !! !  ! ! ||||||! !   |||  !  !  !   |||:::   |||
         SerCysGluLeuSerLeu***SerSerGlnCysProValThrTrpThrLeuSerArgSer
 50366 : TCCTGTGAGTTGTCTCTTTAATCTTCACAGTGCCCTGTGACATGGACACTGTCACGATCC : 50425

   129 : SerCysLeuSerLeu{Le}  >>>> Target Intron 2 >>>>  {u}ArgSerThr :   137
         ||||||||||||!!!{  }           3752 bp           {!} !!|||!:!
         SerCysLeuSerPhe{Gl}+-                         +-{y}GlySerSer
 50426 : TCATGTTTATCATTT{GG}ga.........................at{A}GGGTCAAGT : 54204

   138 : ProAlaAlaSerCysGluGluGluGluLeuProProAspProSerGluGluThrLeuThr :   157
         ||||||||||||! !|||||||||||||||||||||||||||||||||||||||||||||
         ProAlaAlaSerTyrGluGluGluGluLeuProProAspProSerGluGluThrLeuThr
 54205 : CCTGCTGCCAGCTACGAGGAGGAGGAGCTGCCTCCTGACCCCAGTGAGGAGACGCTCACC : 54264

   158 : IleGluAlaArgPheGlnProLeuLeuProGluThrMetThrLysSerLysAspGlyPhe :   177
         |||||||||||||||||||||||||||||||||:!!||||||||||||||||||||||||
         IleGluAlaArgPheGlnProLeuLeuProGluSerMetThrLysSerLysAspGlyPhe
 54265 : ATAGAAGCCCGATTCCAGCCTCTGCTCCCGGAGTCCATGACCAAGAGCAAAGACGGGTTC : 54324

   178 : LeuGly  >>>> Target Intron 3 >>>>  ValSerArgLeuAlaLeuSerGlyL :   188
         ||||||           2731 bp           |||||||||||||||||||||||||
         LeuGly++                         ++ValSerArgLeuAlaLeuSerGlyL
 54325 : CTAGGGgt.........................agGTCTCCCGCCTGGCCCTGTCTGGCC : 57088

   189 : euArgAsnTrpThrAlaAlaAlaSerProSerAlaValPheAlaThrArgHisPheGlnP :   208
         ||||||||||||||.!!|||||||||||||||||||||||||||.!!|||||||||||||
         euArgAsnTrpThrThrAlaAlaSerProSerAlaValPheAlaAlaArgHisPheGlnP
 57089 : TCCGCAACTGGACGACCGCAGCCTCGCCAAGCGCTGTGTTTGCCGCCCGCCACTTCCAGC : 57148

   209 : roPheLeuProProProGlyGln<->GluLeuGlyGluProTrpTrpIleIleProSerG :   227
         ||||||||||||||! !|||!!.   ||||||||||||||||||||||||||||||||||
         roPheLeuProProArgGlyHisValGluLeuGlyGluProTrpTrpIleIleProSerG
 57149 : CCTTCCTCCCGCCTCGGGGCCACGTGGAGCTGGGCGAGCCCTGGTGGATCATCCCCAGTG : 57208

   228 : luLeuSerMetPheThrGlyTyrLeuSerAsnAsnArgPheTyrProProProProLysG :   247
         ||||||||:!:|||||||||||||||||||||||||||||||||||||||||||||||||
         luLeuSerValPheThrGlyTyrLeuSerAsnAsnArgPheTyrProProProProLysG
 57209 : AGCTGAGCGTCTTCACCGGCTATTTGTCCAACAACCGCTTCTACCCGCCACCGCCCAAGG : 57268

   248 : lyLysGlu  >>>> Target Intron 4 >>>>  ValIleIleHisArgLeuLeuSe :   257
         ||||||||            217 bp           |||||||||||||||||||||||
         lyLysGlu++                         ++ValIleIleHisArgLeuLeuSe
 57269 : GCAAGGAGgt.........................agGTCATCATCCACCGGCTCCTGAG : 57515

   258 : rMetPheHisProArgProPheValLysThrArgPheAlaProGlnGlyAlaValAlaCy :   277
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         rMetPheHisProArgProPheValLysThrArgPheAlaProGlnGlyAlaValAlaCy
 57516 : CATGTTCCACCCGCGGCCCTTCGTGAAGACCCGCTTTGCCCCTCAGGGGGCCGTCGCCTG : 57575

   278 : sLeuThrAlaIleSerAspPheTyrTyrThrValMetPhe{Ar}  >>>> Target In :   291
         ||||||||||||||||||||||||||||||||||||||||{||}            515 
         sLeuThrAlaIleSerAspPheTyrTyrThrValMetPhe{Ar}++              
 57576 : CCTGACTGCCATCAGTGATTTCTACTACACCGTGATGTTC{CG}gt.............. : 57621

   292 : tron 5 >>>>  {g}IleHisAlaGluPheGlnLeuSerGluProProAspPheProPh :   306
         bp           {|}||||||||||||||||||||||||||||||||||||||||||||
                    ++{g}IleHisAlaGluPheGlnLeuSerGluProProAspPheProPh
 57622 : ...........ag{C}ATCCACGCCGAGTTCCAGCTCAGCGAACCACCCGACTTCCCCTT : 58177

   307 : eTrpPheSerProAlaGlnPheThrGlyHisIleIleLeuSerLysAspAlaThrHisVa :   326
         |||||||||||||!.!||||||||||||||||||||||||||||||||||||||||||||
         eTrpPheSerProGlyGlnPheThrGlyHisIleIleLeuSerLysAspAlaThrHisVa
 58178 : CTGGTTCTCGCCCGGCCAGTTCACCGGCCACATCATCCTCTCCAAAGACGCCACCCATGT : 58237

   327 : lArgAspPheArgLeuPheValProAsnHis{Ar}  >>>> Target Intron 6 >> :   337
         |||||||||||||||||||||||||||||||{||}           1651 bp       
         lArgAspPheArgLeuPheValProAsnHis{Ar}++                       
 58238 : CCGTGACTTCCGGCTCTTCGTGCCCAACCAC{AG}gt....................... : 58274

   338 : >>  {g}SerLeuAsnValAspMetGluTrpLeuTyrGlyAlaSerGluSerSerAsnMe :   355
             {|}|||||||||||||||||||||||||||||||||||||||||||||||||||||
           ++{g}SerLeuAsnValAspMetGluTrpLeuTyrGlyAlaSerGluSerSerAsnMe
 58275 : ..ag{G}TCTCTGAATGTGGACATGGAGTGGCTGTACGGGGCCAGTGAGAGCAGCAACAT : 59975

   356 : tGluValAspIleGlyTyrIleProGln  >>>> Target Intron 7 >>>>  Met :   365
         ||||||||||||||||||||||||||||            442 bp           |||
         tGluValAspIleGlyTyrIleProGln++                         ++Met
 59976 : GGAGGTGGACATCGGCTACATACCCCAGgt.........................agATG : 60447

   366 : GluLeuGluAlaThrGlyProSerValProSerValIleLeuAspGluAspGlySerMet :   385
         ||||||||||||..!|||||||||||||||||||||||||||||||||||||||!:!|||
         GluLeuGluAlaValGlyProSerValProSerValIleLeuAspGluAspGlyAsnMet
 60448 : GAGCTGGAGGCCGTGGGCCCCTCCGTGCCCTCCGTGATCCTGGACGAGGATGGCAACATG : 60507

   386 : IleAspSerHisLeuProSerGlyGluProLeuGlnPheValPheGluGluIleLysTrp :   405
         |||||||||!.!||||||||||||||||||||||||||||||||||||!!:|||||||||
         IleAspSerArgLeuProSerGlyGluProLeuGlnPheValPheGluAspIleLysTrp
 60508 : ATCGACAGCCGCCTGCCCTCAGGGGAGCCCCTCCAGTTTGTGTTTGAGGACATCAAGTGG : 60567

   406 : GlnGlnGluLeuSerTrpGluGluAlaAlaArgArgLeuGluValAlaMetTyrProPhe :   425
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlnGlnGluLeuSerTrpGluGluAlaAlaArgArgLeuGluValAlaMetTyrProPhe
 60568 : CAGCAGGAGCTGAGCTGGGAGGAGGCTGCCCGGCGCCTGGAGGTGGCCATGTACCCCTTC : 60627

   426 : LysLys  >>>> Target Intron 8 >>>>  ValSerTyrLeuProPheThrGluA :   436
         ||||||            391 bp           |||!!!|||||||||||||||||||
         LysLys++                         ++ValThrTyrLeuProPheThrGluA
 60628 : AAGAAGgt.........................agGTCACTTACTTGCCGTTCACCGAGG : 61051

   437 : laPheAspArgAlaLysAlaGluAsnLysLeuValHisSerIleLeuLeuTrpGlyAlaL :   456
         ||||||||!:!|||||||||:!!|||||||||||||||||||||||||||||||||||||
         laPheAspGlnAlaLysAlaLysAsnLysLeuValHisSerIleLeuLeuTrpGlyAlaL
 61052 : CCTTTGACCAAGCCAAGGCCAAGAACAAGCTGGTGCACTCGATCCTGCTGTGGGGGGCCC : 61111

   457 : euAspAspGlnSerCysUnk{G}  >>>> Target Intron 9 >>>>  {ly}SerG :   465
         |||||||||||||||||   {|}           1070 bp           {||}||||
         euAspAspGlnSerCys***{G}++                         ++{ly}SerG
 61112 : TGGACGACCAGTCTTGCTGA{G}gt.........................ag{GT}TCAG : 62208

   466 : lyArgThrLeuArgGluThrValLeuGluSerSerProIleLeuThrLeuLeuAsnGluS :   485
         ||||||||||||||||||||||||||||||||||||||||||||.!!|||||||||||||
         lyArgThrLeuArgGluThrValLeuGluSerSerProIleLeuAlaLeuLeuAsnGluS
 62209 : GGCGGACTCTCCGGGAGACTGTCCTGGAAAGTTCGCCCATCCTCGCCCTCCTCAACGAGA : 62268

   486 : erPheIleSerThrTrpSerLeuValLysGluLeuGluGluLeuGln  >>>> Target :   501
         ||||||||||||||||||||||||||||||||||||||!!:||||||             
         erPheIleSerThrTrpSerLeuValLysGluLeuGluAspLeuGln++           
 62269 : GCTTCATCAGCACGTGGTCCCTGGTGAAGGAGCTGGAGGACCTGCAGgt........... : 62318

   502 :  Intron 10 >>>>  AsnAsnGlnGluAsnSerSerHisGlnLysLeuAlaGlyLeuH :   515
         92 bp            :!!||||||!!:||| !!||||||:!!||||||||||||||||
                        ++AspAsnGlnAspAsnProSerHisLysLysLeuAlaGlyLeuH
 62319 : ...............agGACAACCAGGACAACCCATCCCACAAGAAGCTGGCTGGCCTGC : 62450

   516 : isLeuGluLysTyrSerPheProValGluMetMetIleCysLeuProAsnGlyThrVal  :   535
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
         isLeuGluLysTyrSerPheProValGluMetMetIleCysLeuProAsnGlyThrVal+
 62451 : ACCTGGAGAAGTACAGCTTCCCCGTGGAGATGATGATCTGCCTGCCCAATGGCACCGTGg : 62510

   536 :  >>>> Target Intron 11 >>>>  ValHisHisIleAsnAlaAsnTyrPheLeuA :   545
                    1456 bp           |||||||||||||||||||||||||||||||
         +                          ++ValHisHisIleAsnAlaAsnTyrPheLeuA
 62511 : t..........................agGTCCACCACATCAACGCCAACTACTTCTTGG : 63996

   546 : spIleThrSerValLysProGluGluIleGluSerAsnLeuPheSerPheSerSerThrP :   565
         |||||||||||:!!|||||||||!!:||||||!:!|||:!!|||||||||||||||||||
         spIleThrSerMetLysProGluAspIleGluAsnAsnValPheSerPheSerSerThrP
 63997 : ACATCACCTCCATGAAGCCTGAGGACATCGAGAACAACGTCTTCAGCTTCTCGTCCACTT : 64056

   566 : heGluAspProSerThrAlaThrTyrMetGlnPheLeuLysGluGlyLeuArgArgGlyL :   585
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         heGluAspProSerThrAlaThrTyrMetGlnPheLeuLysGluGlyLeuArgArgGlyL
 64057 : TTGAAGACCCGTCCACGGCCACTTACATGCAGTTCCTGAAGGAGGGCCTTCGGCGCGGCC : 64116

   586 : euProLeuLeuGlnPro :   590
         |||||||||||||||||
         euProLeuLeuGlnPro
 64117 : TGCCGCTCCTCCAGCCC : 64133

vulgar: SPP00000018_1.0 59 590 . gi|398923877|gb|JH767739.1|:subseq(19974323,114100) 49981 64133 + 2338 M 41 123 S 0 1 5 0 2 I 0 235 3 0 2 S 1 2 M 32 96 S 0 2 5 0 2 I 0 3748 3 0 2 S 1 1 M 45 135 5 0 2 I 0 2727 3 0 2 M 36 108 G 0 3 M 34 102 5 0 2 I 0 213 3 0 2 M 41 123 S 0 2 5 0 2 I 0 511 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 1647 3 0 2 S 1 1 M 27 81 5 0 2 I 0 438 3 0 2 M 63 189 5 0 2 I 0 387 3 0 2 M 35 105 S 0 1 5 0 2 I 0 1066 3 0 2 S 1 2 M 37 111 5 0 2 I 0 88 3 0 2 M 34 102 5 0 2 I 0 1452 3 0 2 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	gene	49982	64133	2338	+	.	gene_id 1 ; sequence SPP00000018_1.0 ; gene_orientation +
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	49982	50105	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	49982	50105	.	+	.	insertions 0 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice5	50106	50107	.	+	.	intron_id 1 ; splice_site "GT"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	intron	50106	50344	.	+	.	intron_id 1
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice3	50343	50344	.	+	.	intron_id 0 ; splice_site "AG"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	50345	50444	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	50345	50444	.	+	.	insertions 0 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice5	50445	50446	.	+	.	intron_id 2 ; splice_site "GA"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	intron	50445	54196	.	+	.	intron_id 2
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice3	54195	54196	.	+	.	intron_id 1 ; splice_site "AT"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	54197	54332	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	54197	54332	.	+	.	insertions 0 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice5	54333	54334	.	+	.	intron_id 3 ; splice_site "GT"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	intron	54333	57063	.	+	.	intron_id 3
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice3	57062	57063	.	+	.	intron_id 2 ; splice_site "AG"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	57064	57276	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	57064	57276	.	+	.	insertions 3 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice5	57277	57278	.	+	.	intron_id 4 ; splice_site "GT"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	intron	57277	57493	.	+	.	intron_id 4
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice3	57492	57493	.	+	.	intron_id 3 ; splice_site "AG"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	57494	57618	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	57494	57618	.	+	.	insertions 0 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice5	57619	57620	.	+	.	intron_id 5 ; splice_site "GT"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	intron	57619	58133	.	+	.	intron_id 5
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice3	58132	58133	.	+	.	intron_id 4 ; splice_site "AG"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	58134	58271	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	58134	58271	.	+	.	insertions 0 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice5	58272	58273	.	+	.	intron_id 6 ; splice_site "GT"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	intron	58272	59922	.	+	.	intron_id 6
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice3	59921	59922	.	+	.	intron_id 5 ; splice_site "AG"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	59923	60004	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	59923	60004	.	+	.	insertions 0 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice5	60005	60006	.	+	.	intron_id 7 ; splice_site "GT"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	intron	60005	60446	.	+	.	intron_id 7
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice3	60445	60446	.	+	.	intron_id 6 ; splice_site "AG"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	60447	60635	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	60447	60635	.	+	.	insertions 0 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice5	60636	60637	.	+	.	intron_id 8 ; splice_site "GT"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	intron	60636	61026	.	+	.	intron_id 8
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice3	61025	61026	.	+	.	intron_id 7 ; splice_site "AG"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	61027	61132	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	61027	61132	.	+	.	insertions 0 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice5	61133	61134	.	+	.	intron_id 9 ; splice_site "GT"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	intron	61133	62202	.	+	.	intron_id 9
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice3	62201	62202	.	+	.	intron_id 8 ; splice_site "AG"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	62203	62315	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	62203	62315	.	+	.	insertions 0 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice5	62316	62317	.	+	.	intron_id 10 ; splice_site "GT"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	intron	62316	62407	.	+	.	intron_id 10
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice3	62406	62407	.	+	.	intron_id 9 ; splice_site "AG"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	62408	62509	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	62408	62509	.	+	.	insertions 0 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice5	62510	62511	.	+	.	intron_id 11 ; splice_site "GT"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	intron	62510	63965	.	+	.	intron_id 11
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	splice3	63964	63965	.	+	.	intron_id 10 ; splice_site "AG"
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	cds	63966	64133	.	+	.	
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	exon	63966	64133	.	+	.	insertions 0 ; deletions 0
gi|398923877|gb|JH767739.1|:subseq(19974323,114100)	exonerate:protein2genome:local	similarity	49982	64133	2338	+	.	alignment_id 1 ; Query SPP00000018_1.0 ; Align 49982 60 123 ; Align 50347 102 96 ; Align 54198 135 135 ; Align 57064 180 108 ; Align 57175 216 102 ; Align 57494 250 123 ; Align 58135 292 135 ; Align 59924 338 81 ; Align 60447 365 189 ; Align 61027 428 105 ; Align 62205 464 111 ; Align 62408 501 102 ; Align 63966 535 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
