Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/MM.SelO.1.fa.x.fa -t 3B.fastasub.dir/1.MM.SelO.1.fa.x.fa]
Hostname: [ws116063]

C4 Alignment:
------------
         Query: SPP00001580_2.0 # Protein # Selenoprotein O (SelO) # Mouse (Mus musculus)
        Target: gi|398921791|gb|JH767792.1|:subseq(11512168,112334) Ceratotherium simum simum unplaced genomic scaffold scaffold00070, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2317
   Query range: 63 -> 667
  Target range: 15768 -> 62334

    64 : ProProProGlyProGluAspSerLeuAlaThrProArgProValProGlyAlaCysPhe :    83
         ||||||! !||| !!    ! .!!! !:!!|||||||||||||||! ! !!!.!      
         ProProLeuGlySerCysLysGlyGlnSerThrProArgProValLeuTrpValGlnGln
 15769 : CCGCCCCTAGGCTCGTGCAAAGGCCAGTCCACCCCCAGGCCAGTGCTGTGGGTGCAGCAG : 15826

    84 : SerArgAlaArgProAla  >>>> Target Intron 1 >>>>  ProLeuArgArgP :    94
         !!!!:!  !|||  !  !           27084 bp            !  ! !!||||
         ArgLysArgArgSerLeu++                         ++SerThrGlyArgP
 15827 : AGGAAGAGGAGGAGCCTGgt.........................agAGCACGGGCAGGC : 42943

    95 : roArgLeuValAlaLeuSerGluProAlaLeu{A}  >>>> Target Intron 2 >> :   105
         ||||||||||||||  !.!!.!.|||!.!|||{.}           6967 bp       
         roArgLeuValAlaThrGlyAsnProValLeu{U}++                       
 42944 : CTCGCCTCGTGGCCACAGGAAACCCTGTGCTT{T}gt....................... : 42979

   106 : >>  {la}LeuLeuGlyLeuGluAlaSerGluGluAlaGluValGluAlaGluAlaAlaL :   123
             {..}               ......      ...     !||||||||||||||||
           --{nk}UnkUnkUnkUnkUnkUnkUnkUnkUnkUnkUnkUnkGluAlaGluAlaAlaL
 42980 : ..nn{NN}NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGAGGCCGAGGCCGCGC : 49997

   124 : euPhePheSerGlyAsnAlaLeuLeuProGlyThrGluProAlaAlaHisCysTyrCysG :   143
         ||||||||||||||||||||||||||||||||.!!|||||||||||||||||||||||||
         euPhePheSerGlyAsnAlaLeuLeuProGlyAlaGluProAlaAlaHisCysTyrCysG
 49998 : TCTTCTTCAGCGGGAACGCGCTGCTGCCGGGCGCCGAGCCCGCCGCGCACTGCTACTGCG : 50057

   144 : lyHisGlnPheGlyGlnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyG :   163
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lyHisGlnPheGlyGlnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyG
 50058 : GCCACCAGTTCGGCCAGTTCGCTGGGCAGCTGGGCGACGGCGCCGCCATGTACCTGGGCG : 50117

   164 : luValCysThrAlaAlaGlyGluArgTrpGluLeuGlnLeuLysGlyAlaGlyProThrP :   183
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         luValCysThrAlaAlaGlyGluArgTrpGluLeuGlnLeuLysGlyAlaGlyProThrP
 50118 : AGGTGTGCACAGCGGCCGGCGAGCGCTGGGAGCTGCAGCTCAAGGGCGCCGGCCCCACGC : 50177

   184 : roPheSer{Ar}  >>>> Target Intron 3 >>>>  {g}GlnAlaAspGlyArgL :   192
         ||||||||{||}           2374 bp           {|}||||||||||||||||
         roPheSer{Ar}++                         ++{g}GlnAlaAspGlyArgL
 50178 : CCTTCTCC{AG}gt.........................ag{A}CAGGCTGATGGTCGCA : 52578

   193 : ysValLeuArgSerSerIleArgGluPheLeuCysSerGluAlaMetPheHisLeuGlyI :   212
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ysValLeuArgSerSerIleArgGluPheLeuCysSerGluAlaMetPheHisLeuGlyI
 52579 : AAGTGCTGCGGTCAAGCATCCGAGAGTTCCTGTGCAGCGAAGCCATGTTCCACCTGGGGA : 52638

   213 : leProThrThrArgAlaGlyAlaCysValThrSerGluSerThrValMetArgAspValP :   232
         |||||||||||||||||||||||||||||||||||:!!|||||||||!!:||||||||||
         leProThrThrArgAlaGlyAlaCysValThrSerGlnSerThrValIleArgAspValP
 52639 : TCCCCACCACGAGGGCCGGGGCCTGCGTCACATCCCAGTCCACAGTCATTCGAGACGTGT : 52698

   233 : heTyrAspGlyAsnProLysTyrGluLysCysThrValValLeuArgIleAlaProThrP :   252
         ||||||||||||||||||||||||||||||||||||||||||||||||||||| !!||||
         heTyrAspGlyAsnProLysTyrGluLysCysThrValValLeuArgIleAlaSerThrP
 52699 : TCTATGATGGTAATCCAAAATATGAAAAATGCACAGTTGTGTTGCGTATAGCTTCCACTT : 52758

   253 : heIle{Ar}  >>>> Target Intron 4 >>>>  {g}PheGlySerPheGluIleP :   261
         ||:!!{||}           1492 bp           {|}|||||||||||||||||||
         heLeu{Ar}++                         ++{g}PheGlySerPheGluIleP
 52759 : TTCTA{AG}gt.........................ag{G}TTCGGCTCCTTTGAGATTT : 54277

   262 : heLysProProAspGluHisThrGlyArgAlaGlyProSerValGlyArgAspAspIleA :   281
         ||||| !! !!|||||||||||||||||||||||||||||||||||||||:!!|||||||
         heLysSerAlaAspGluHisThrGlyArgAlaGlyProSerValGlyArgAsnAspIleA
 54278 : TTAAGTCTGCAGATGAGCACACAGGCCGTGCAGGCCCCAGCGTGGGGAGAAATGACATCC : 54337

   282 : rgValGlnLeuLeuAspTyrValIleSerSerPheTyrProGluIleGlnAlaAlaHisT :   301
         ||||||||:!!|||||||||||||||.!!||||||||||||||||||||||||:!!||| 
         rgValGlnMetLeuAspTyrValIleGlySerPheTyrProGluIleGlnAlaSerHis-
 54338 : GGGTGCAGATGCTTGACTATGTGATTGGCAGTTTTTACCCTGAAATCCAGGCCTCTCAT- : 54397

   302 : hrCysAspThrAspAsnIleGlnArgAsnAlaAlaPhePheArgGlu  >>>> Target :   317
              ! !!:!|||!:!:!:|||||||||||||||||||||||||||           15
         -----GlySerAspSerValGlnArgAsnAlaAlaPhePheArgGlu++           
 54398 : -----GGCAGTGACAGTGTGCAGAGGAATGCGGCCTTCTTCCGGGAGgt........... : 54441

   318 :  Intron 5 >>>>  ValThrGlnArgThrAlaArgMetValAlaGluTrpGlnCysVa :   331
         40 bp           ||||||!::|||||||||||||||||||||||||||||||||||
                       ++ValThrArgArgThrAlaArgMetValAlaGluTrpGlnCysVa
 54442 : ..............agGTGACGCGTCGCACAGCCCGGATGGTGGCTGAGTGGCAGTGTGT : 56021

   332 : lGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleValGlyLeuThrIleAs :   351
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleValGlyLeuThrIleAs
 56022 : CGGCTTCTGCCACGGCGTGCTCAACACAGACAACATGAGCATCGTGGGGCTTACCATCGA : 56081

   352 : pTyrGlyProPheGlyPheLeuAsp{Ar}  >>>> Target Intron 6 >>>>  {g :   360
         |||||||||||||||||||||||||{||}            584 bp           {|
         pTyrGlyProPheGlyPheLeuAsp{Ar}++                         ++{g
 56082 : CTACGGGCCCTTCGGCTTCCTGGAC{CG}gt.........................ag{G : 56694

   361 : }TyrAspProAspHisIleCysAsnAlaSerAspAsnAlaGlyArgTyrThrTyrSerLy :   380
         }|||||||||||||||:!:|||||||||||||||!:!||||||||||||.!!||||||||
         }TyrAspProAspHisValCysAsnAlaSerAspSerAlaGlyArgTyrAlaTyrSerLy
 56695 : }TACGACCCCGACCACGTGTGCAATGCCTCCGACAGCGCTGGGCGCTATGCATACAGCAA : 56752

   381 : sGlnProGlnValCysLysTrpAsnLeuGlnLysLeuAlaGluAlaLeuGluProGluLe :   400
         |||||||:!!||||||||||||||||||||||||||||||||||||||||||||||||||
         sGlnProGluValCysLysTrpAsnLeuGlnLysLeuAlaGluAlaLeuGluProGluLe
 56753 : GCAGCCTGAGGTGTGCAAGTGGAACCTGCAGAAGCTGGCCGAGGCCCTGGAGCCCGAGCT : 56812

   401 : uProLeuAlaLeuAlaGluAlaIleLeuLysGluGluPheAspThrGluPheGlnArgHi :   420
         ||||! !! !|||!.!||||||||||||  !||||||||||||.!!||||||!::|||||
         uProArgGluLeuGlyGluAlaIleLeuAlaGluGluPheAspAlaGluPheArgArgHi
 56813 : GCCCCGAGAGCTGGGTGAGGCCATCCTAGCGGAGGAATTTGATGCTGAGTTCCGCAGGCA : 56872

   421 : sTyrLeuGlnLysMetArgLysLysLeuGlyLeuIleArgValGluLysGluGluAspGl :   440
         ||||||||||||||||||||||||||||||||||:!: !!!.!|||::!|||||||||||
         sTyrLeuGlnLysMetArgLysLysLeuGlyLeuValGlyAlaGluArgGluGluAspGl
 56873 : CTACCTGCAGAAGATGCGCAAGAAGCTGGGCCTGGTGGGGGCCGAGCGGGAGGAGGATGG : 56932

   441 : yThrLeuValAlaLysLeuLeuGluThrMetHisLeuThr{G}  >>>> Target Int :   454
         |..!|||||||||||||||||||||||||||!!.||||||{|}           3374 b
         yValLeuValAlaLysLeuLeuGluThrMetGlnLeuThr{G}++               
 56933 : AGTGCTGGTGGCCAAGCTCCTGGAGACCATGCAGCTGACT{G}gt............... : 56977

   455 : ron 7 >>>>  {ly}AlaAspPheThrAsnThrPheCysValLeuSerSerPheProAl :   469
         p           {||}|||||||||||||||||||||! !:!!|||||||||||||||!.
                   ++{ly}AlaAspPheThrAsnThrPheTyrLeuLeuSerSerPheProVa
 56978 : ..........ag{GT}GCTGACTTCACAAACACCTTCTACTTGCTGAGCTCCTTCCCAGT : 60393

   470 : a<-><->AspLeuSerAspSerAlaGluPheLeuSerArgLeuThrSerGlnCysAlaSe :   487
         !      !!:! !  !! !  !.!!|||||||||:!!  !||||||!!!|||||||||||
         lGlyProGluSerLeuGlyLeuThrGluPheLeuAlaAlaLeuThrThrGlnCysAlaSe
 60394 : GGGGCCTGAGTCTCTGGGCCTGACCGAGTTCCTGGCTGCACTGACCACACAGTGTGCCTC : 60453

   488 : rLeuGluGluLeuArgLeuAlaPheArgProGlnMetAspPro{Ar}  >>>> Target :   502
         |||||||||||||||||||||||||||||||||||||||||||{||}           10
         rLeuGluGluLeuArgLeuAlaPheArgProGlnMetAspPro{Ar}++           
 60454 : CCTGGAGGAGCTGAGGCTGGCCTTCCGACCCCAGATGGATCCC{CG}gt........... : 60502

   503 :  Intron 8 >>>>  {g}GlnLeuSerMetMetLeuMetLeuAlaGlnSerAsnProGl :   516
         35 bp           {|}|||||||||||||||||||||||||||||||||||||||||
                       ++{g}GlnLeuSerMetMetLeuMetLeuAlaGlnSerAsnProGl
 60503 : ..............ag{G}CAGCTCTCCATGATGCTGATGCTGGCGCAGTCGAACCCACA : 61575

   517 : nLeuPheAlaLeuIleGlyThrGlnAlaAsnValThrLysGluLeuGluArgValGluHi :   536
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||!!
         nLeuPheAlaLeuIleGlyThrGlnAlaAsnValThrLysGluLeuGluArgValGluGl
 61576 : GCTCTTCGCGCTCATTGGCACCCAGGCAAACGTCACAAAGGAGCTGGAGCGTGTGGAGCA : 61635

   537 : sGlnSerArgLeuGluGlnLeuSerProSerAspLeuGlnArgLysAsnArgAspHisTr :   556
         .|||||||||||||||||||||||||||:!!!!:|||! !!!!!:!||||||! !|||||
         nGlnSerArgLeuGluGlnLeuSerProAlaGluLeuLeuSerArgAsnArgGlyHisTr
 61636 : GCAGTCGCGGCTGGAGCAGCTGAGCCCGGCCGAGCTGCTGAGCAGGAACAGGGGCCACTG : 61695

   557 : pGluAlaTrpLeuGlnGluTyr{Ar}  >>>> Target Intron 9 >>>>  {g}As :   565
         |!  ! !|||||||||||||||{||}            171 bp           {|}! 
         pAlaAspTrpLeuGlnGluTyr{Ar}++                         ++{g}Al
 61696 : GGCTGATTGGCTGCAGGAGTAC{AG}gt.........................ag{A}GC : 61893

   566 : pArgLeuAspLysGluLysGluGlyValGlyAspThrAlaAlaTrpGlnAlaGluArgVa :   585
         !||||||!!::!!!!:!:!||||||!.!|||||| !!! !||||||||||||||||||||
         aArgLeuGluGluAspArgGluGlyAlaGlyAspProAspAlaTrpGlnAlaGluArgVa
 61894 : CCGGCTGGAGGAGGACAGGGAGGGTGCTGGCGACCCTGACGCCTGGCAGGCTGAGCGCGT : 61953

   586 : lArgValMetArgAlaAsnAsnProLysTyrValLeuArgAsnTyrIleAlaGlnLysAl :   605
         |!.!:!!|||!.!||||||||||||||||||||||||||||||||||||||||||!  ||
         lHisIleMetHisAlaAsnAsnProLysTyrValLeuArgAsnTyrIleAlaGlnThrAl
 61954 : GCACATCATGCATGCCAACAACCCCAAGTACGTGCTGAGGAACTACATCGCGCAGACTGC : 62013

   606 : aIleGluAlaAlaGluAsnGlyAspPheSerGlu  >>>> Target Intron 10 >> :   617
         ||||||||||||||||!.!|||||||||||||||            103 bp        
         aIleGluAlaAlaGluThrGlyAspPheSerGlu+-                        
 62014 : CATAGAGGCTGCCGAGACTGGAGACTTCTCAGAGgc........................ : 62051

   618 : >>  ValArgArgValLeuLysLeuLeuGluSerProTyrHisSerGlu{G}  >>>> T :   632
             |||||||||||||||||||||||||||..!|||||||||!!!|||{|}        
           ++ValArgArgValLeuLysLeuLeuGluAspProTyrHisArgGlu{G}+-      
 62052 : ..agGTGCGGAGAGTGCTGAAGCTGCTGGAGGACCCTTACCACAGGGAG{G}gg...... : 62200

   633 : arget Intron 11 >>>>  {lu}GluAlaThrGlyProGluAlaValAlaArgSerT :   644
              30 bp            {||}   ! !  !!.!  !|||!.!!.!::!|||:!!.
                             +-{lu}ProGluGlyAlaGlyGluGlyAlaSerArgAlaA
 62201 : ....................ac{AG}CCTGAGGGGGCTGGTGAGGGGGCCAGCAGGGCGG : 62263

   645 : hrGluGluGlnSerSerTyrSerAsnArgProProLeuTrpAlaAlaGluLeuCysValT :   664
         !!!  ..!!:! !!|||||||||!:!!:!|||||||||||||||||||||||||||||||
         laGlyArgArgArgSerTyrSerSerLysProProLeuTrpAlaAlaGluLeuCysValT
 62264 : CCGGCAGGCGGCGCTCCTACAGCAGCAAGCCCCCACTCTGGGCTGCAGAACTGTGTGTAA : 62323

   665 : hrUnkSerSer :   667
         ||   ||||||
         hr***SerSer
 62324 : CATGATCCTCG : 62334

vulgar: SPP00001580_2.0 63 667 . gi|398921791|gb|JH767792.1|:subseq(11512168,112334) 15768 62334 + 2317 M 26 78 5 0 2 I 0 27080 3 0 2 M 15 45 S 0 1 5 0 2 I 0 6963 3 0 2 S 1 2 M 80 240 S 0 2 5 0 2 I 0 2370 3 0 2 S 1 1 M 67 201 S 0 2 5 0 2 I 0 1488 3 0 2 S 1 1 M 46 138 G 2 0 M 14 42 5 0 2 I 0 1536 3 0 2 M 43 129 S 0 2 5 0 2 I 0 580 3 0 2 S 1 1 M 93 279 S 0 1 5 0 2 I 0 3370 3 0 2 S 1 2 M 15 45 G 0 6 M 32 96 S 0 2 5 0 2 I 0 1031 3 0 2 S 1 1 M 61 183 S 0 2 5 0 2 I 0 167 3 0 2 S 1 1 M 52 156 5 0 2 I 0 99 3 0 2 M 15 45 S 0 1 5 0 2 I 0 26 3 0 2 S 1 2 M 35 105
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	gene	15769	62334	2317	+	.	gene_id 1 ; sequence SPP00001580_2.0 ; gene_orientation +
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	15769	15846	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	15769	15846	.	+	.	insertions 0 ; deletions 0
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice5	15847	15848	.	+	.	intron_id 1 ; splice_site "GT"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	intron	15847	42930	.	+	.	intron_id 1
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice3	42929	42930	.	+	.	intron_id 0 ; splice_site "AG"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	42931	42976	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	42931	42976	.	+	.	insertions 0 ; deletions 0
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice5	42977	42978	.	+	.	intron_id 2 ; splice_site "GT"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	intron	42977	49943	.	+	.	intron_id 2
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice3	49942	49943	.	+	.	intron_id 1 ; splice_site "NN"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	49944	50187	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	49944	50187	.	+	.	insertions 0 ; deletions 0
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice5	50188	50189	.	+	.	intron_id 3 ; splice_site "GT"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	intron	50188	52561	.	+	.	intron_id 3
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice3	52560	52561	.	+	.	intron_id 2 ; splice_site "AG"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	52562	52765	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	52562	52765	.	+	.	insertions 0 ; deletions 0
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice5	52766	52767	.	+	.	intron_id 4 ; splice_site "GT"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	intron	52766	54257	.	+	.	intron_id 4
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice3	54256	54257	.	+	.	intron_id 3 ; splice_site "AG"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	54258	54438	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	54258	54438	.	+	.	insertions 0 ; deletions 2
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice5	54439	54440	.	+	.	intron_id 5 ; splice_site "GT"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	intron	54439	55978	.	+	.	intron_id 5
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice3	55977	55978	.	+	.	intron_id 4 ; splice_site "AG"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	55979	56109	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	55979	56109	.	+	.	insertions 0 ; deletions 0
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice5	56110	56111	.	+	.	intron_id 6 ; splice_site "GT"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	intron	56110	56693	.	+	.	intron_id 6
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice3	56692	56693	.	+	.	intron_id 5 ; splice_site "AG"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	56694	56974	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	56694	56974	.	+	.	insertions 0 ; deletions 0
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice5	56975	56976	.	+	.	intron_id 7 ; splice_site "GT"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	intron	56975	60348	.	+	.	intron_id 7
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice3	60347	60348	.	+	.	intron_id 6 ; splice_site "AG"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	60349	60499	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	60349	60499	.	+	.	insertions 6 ; deletions 0
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice5	60500	60501	.	+	.	intron_id 8 ; splice_site "GT"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	intron	60500	61534	.	+	.	intron_id 8
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice3	61533	61534	.	+	.	intron_id 7 ; splice_site "AG"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	61535	61720	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	61535	61720	.	+	.	insertions 0 ; deletions 0
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice5	61721	61722	.	+	.	intron_id 9 ; splice_site "GT"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	intron	61721	61891	.	+	.	intron_id 9
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice3	61890	61891	.	+	.	intron_id 8 ; splice_site "AG"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	61892	62048	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	61892	62048	.	+	.	insertions 0 ; deletions 0
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice5	62049	62050	.	+	.	intron_id 10 ; splice_site "GC"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	intron	62049	62151	.	+	.	intron_id 10
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice3	62150	62151	.	+	.	intron_id 9 ; splice_site "AG"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	62152	62197	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	62152	62197	.	+	.	insertions 0 ; deletions 0
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice5	62198	62199	.	+	.	intron_id 11 ; splice_site "GG"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	intron	62198	62227	.	+	.	intron_id 11
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	splice3	62226	62227	.	+	.	intron_id 10 ; splice_site "AC"
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	cds	62228	62334	.	+	.	
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	exon	62228	62334	.	+	.	insertions 0 ; deletions 0
gi|398921791|gb|JH767792.1|:subseq(11512168,112334)	exonerate:protein2genome:local	similarity	15769	62334	2317	+	.	alignment_id 1 ; Query SPP00001580_2.0 ; Align 15769 64 78 ; Align 42931 90 45 ; Align 49946 106 240 ; Align 52563 187 201 ; Align 54259 255 138 ; Align 54397 303 42 ; Align 55979 317 129 ; Align 56695 361 279 ; Align 60351 455 45 ; Align 60402 470 96 ; Align 61536 503 183 ; Align 61893 565 156 ; Align 62152 617 45 ; Align 62230 633 105
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
