Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/E.SelT.1.fa.x.fa -t 3B.fastasub.dir/1.E.SelT.1.fa.x.fa]
Hostname: [ws116063]

C4 Alignment:
------------
         Query: SPP00000881_2.0 # Protein # Selenoprotein T (SelT) # Horse (Equus caballus)
        Target: gi|398925264|gb|JH767725.1|:subseq(1013951,104675) Ceratotherium simum simum unplaced genomic scaffold scaffold00003, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 745
   Query range: 0 -> 153
  Target range: 54675 -> 49999

     1 : PhePheCysSerValSerUnkGlyTyrArgArgValPheGluGluTyrMetArgValIle :    20
         |||! !||||||||||||   |||||||||||||||||||||||||||||||||||||||
         PheSerCysSerValSer***GlyTyrArgArgValPheGluGluTyrMetArgValIle
 54675 : TTTTCCTGCAGTGTTTCCTGAGGTTATAGGCGGGTGTTTGAGGAGTACATGCGGGTGATT : 54618

    21 : SerGlnArgTyrProAspIleArgIleGluGlyGluAsnTyrLeuProGlnProIleTyr :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         SerGlnArgTyrProAspIleArgIleGluGlyGluAsnTyrLeuProGlnProIleTyr
 54617 : AGCCAGCGGTACCCGGACATCCGCATTGAAGGTGAGAATTACCTCCCTCAGCCGATATAC : 54558

    41 : {Ar}  >>>> Target Intron 1 >>>>  {g}HisIleAlaSerPheLeuSerVal :    49
         {||}            551 bp           {|}||||||||||||||||||||||||
         {Ar}++                         ++{g}HisIleAlaSerPheLeuSerVal
 54557 : {AG}gt.........................ag{A}CACATAGCATCTTTCCTGTCAGTC : 53980

    50 : PheLysLeuValLeuIleGlyLeuIleIleValGlyLysAspProPheAlaPhePheGly :    69
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         PheLysLeuValLeuIleGlyLeuIleIleValGlyLysAspProPheAlaPhePheGly
 53979 : TTCAAACTAGTATTAATAGGCTTAATAATTGTTGGCAAGGATCCTTTTGCTTTCTTTGGC : 53920

    70 : MetGlnAlaProSerIleTrpGlnTrpGlyGlnGluAsnLys  >>>> Target Intr :    84
         ||||||||||||||||||||||||||||||||||||||||||           2187 bp
         MetGlnAlaProSerIleTrpGlnTrpGlyGlnGluAsnLys++                
 53919 : ATGCAAGCTCCTAGCATCTGGCAGTGGGGCCAAGAAAATAAGgt................ : 53873

    85 : on 2 >>>>  ValTyrAlaCysMetMetValPhePheLeuSerAsnMetValGluAsnG :   100
                    |||||||||||||||||||||||||||||||||||||||:!!|||||||
                  ++ValTyrAlaCysMetMetValPhePheLeuSerAsnMetIleGluAsnG
 53872 : .........agGTTTATGCGTGTATGATGGTCTTCTTCTTGAGCAACATGATTGAGAACC : 51640

   101 : lnCysMetSerThrGlyAlaPheGluIleThrPheAsn{A}  >>>> Target Intro :   113
         ||||||||||||||||||||||||||||||||!!.|||{|}           1479 bp 
         lnCysMetSerThrGlyAlaPheGluIleThrLeuAsn{A}++                 
 51639 : AGTGTATGTCAACAGGTGCATTTGAGATAACTTTGAAT{G}gt................. : 51598

   114 : n 3 >>>>  {sp}ValProValTrpSerLysLeuGluSerGlyHisLeuProSerMetG :   129
                   {||}||||||||||||||||||||||||||||||||||||||||||||||
                 ++{sp}ValProValTrpSerLysLeuGluSerGlyHisLeuProSerMetG
 51597 : ........ag{AT}GTACCTGTGTGGTCTAAGCTGGAATCTGGTCACCTTCCATCCATGC : 50074

   130 : lnGlnLeuValGlnIleLeuAspAsnGluMetLysLeuAsnValHisMetAspProIleP :   149
         ||||||||||||||||||||||||||||||||||||||||||||!.!|||||| !!||||
         lnGlnLeuValGlnIleLeuAspAsnGluMetLysLeuAsnValArgMetAspSerIleP
 50073 : AACAGCTTGTTCAAATTCTTGACAATGAAATGAAGCTCAATGTGCGTATGGATTCAATCC : 50014

   150 : roHisHisGlySer :   153
         ||! !||| !!|||
         roProHisArgSer
 50013 : CACCTCATCGATCA : 50000

vulgar: SPP00000881_2.0 0 153 . gi|398925264|gb|JH767725.1|:subseq(1013951,104675) 54675 49999 - 745 M 40 120 S 0 2 5 0 2 I 0 547 3 0 2 S 1 1 M 42 126 5 0 2 I 0 2183 3 0 2 M 29 87 S 0 1 5 0 2 I 0 1475 3 0 2 S 1 2 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	gene	50000	54675	745	-	.	gene_id 1 ; sequence SPP00000881_2.0 ; gene_orientation +
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	cds	54554	54675	.	-	.	
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	exon	54554	54675	.	-	.	insertions 0 ; deletions 0
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	splice5	54552	54553	.	-	.	intron_id 1 ; splice_site "GT"
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	intron	54003	54553	.	-	.	intron_id 1
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	splice3	54003	54004	.	-	.	intron_id 0 ; splice_site "AG"
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	cds	53876	54002	.	-	.	
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	exon	53876	54002	.	-	.	insertions 0 ; deletions 0
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	splice5	53874	53875	.	-	.	intron_id 2 ; splice_site "GT"
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	intron	51689	53875	.	-	.	intron_id 2
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	splice3	51689	51690	.	-	.	intron_id 1 ; splice_site "AG"
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	cds	51601	51688	.	-	.	
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	exon	51601	51688	.	-	.	insertions 0 ; deletions 0
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	splice5	51599	51600	.	-	.	intron_id 3 ; splice_site "GT"
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	intron	50122	51600	.	-	.	intron_id 3
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	splice3	50122	50123	.	-	.	intron_id 2 ; splice_site "AG"
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	cds	50000	50121	.	-	.	
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	exon	50000	50121	.	-	.	insertions 0 ; deletions 0
gi|398925264|gb|JH767725.1|:subseq(1013951,104675)	exonerate:protein2genome:local	similarity	50000	54675	745	-	.	alignment_id 1 ; Query SPP00000881_2.0 ; Align 54676 1 120 ; Align 54002 42 126 ; Align 51689 84 87 ; Align 50120 114 120
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
