Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/E.SelK.1.fa.x.fa -t 3B.fastasub.dir/1.E.SelK.1.fa.x.fa]
Hostname: [ws116063]

C4 Alignment:
------------
         Query: SPP00000868_2.0 # Protein # Selenoprotein K (SelK) # Horse (Equus caballus)
        Target: gi|398925264|gb|JH767725.1|:subseq(51416090,100104) Ceratotherium simum simum unplaced genomic scaffold scaffold00003, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 467
   Query range: 0 -> 94
  Target range: 53302 -> 47770

     1 : MetValTyrIleSerAsn{G}  >>>> Target Intron 1 >>>>  {ly}GlnVal :     9
         ||||||||||||||||||{|}           3195 bp           {||}||||||
         MetValTyrIleSerAsn{G}++                         ++{ly}GlnVal
 53302 : ATGGTTTACATCTCGAAT{G}gt.........................ag{GA}CAAGTA : 50083

    10 : LeuAspSerArgSerGlnSerProTrpArgLeuSerPheIleThrAspPhePheTrpGly :    29
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuAspSerArgSerGlnSerProTrpArgLeuSerPheIleThrAspPhePheTrpGly
 50082 : TTGGACAGCCGGAGTCAGTCCCCATGGAGATTATCTTTCATAACAGATTTCTTCTGGGGA : 50023

    30 : IleAlaGluPheValValLeu{Ph}  >>>> Target Intron 2 >>>>  {e}Phe :    38
         |||||||||||||||||||||{||}           1462 bp           {|}|||
         IleAlaGluPheValValLeu{Ph}++                         ++{e}Phe
 50022 : ATAGCTGAGTTTGTGGTTTTG{TT}gt.........................ag{T}TTC : 48534

    39 : LysThrLeuLeuGlnGlnAspValLysLysArgArgGlyTyrGlySerSerSerAspSer :    58
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LysThrLeuLeuGlnGlnAspValLysLysArgArgGlyTyrGlySerSerSerAspSer
 48533 : AAAACTCTGCTGCAGCAAGATGTGAAAAAGAGAAGAGGTTATGGAAGCTCATCTGATTCC : 48474

    59 : ArgTyrAspAspGlyArg{Gl}  >>>> Target Intron 3 >>>>  {y}ProPro :    67
         ||||||||||||||||||{||}            593 bp           {|}||||||
         ArgTyrAspAspGlyArg{Gl}++                         ++{y}ProPro
 48473 : AGATATGATGATGGAAGA{GG}gt.........................ag{G}CCTCCA : 47854

    68 : GlyAsnProArgArgArgMetGlyArgIleAsnHisLeuHisGlyProSerProProPro :    87
         |||||||||! !||||||||||||||||||||||||||||||||||||||||||||||||
         GlyAsnProProArgArgMetGlyArgIleAsnHisLeuHisGlyProSerProProPro
 47853 : GGAAACCCCCCGAGAAGAATGGGTCGAATTAATCATCTACATGGCCCTAGTCCTCCTCCA : 47794

    88 : MetAlaGlyGlyUnkGlyArg :    94
         ||||||||||||   ||||||
         MetAlaGlyGly***GlyArg
 47793 : ATGGCTGGTGGATGAGGAAGG : 47771

vulgar: SPP00000868_2.0 0 94 . gi|398925264|gb|JH767725.1|:subseq(51416090,100104) 53302 47770 - 467 M 6 18 S 0 1 5 0 2 I 0 3191 3 0 2 S 1 2 M 29 87 S 0 2 5 0 2 I 0 1458 3 0 2 S 1 1 M 27 81 S 0 2 5 0 2 I 0 589 3 0 2 S 1 1 M 29 87
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	gene	47771	53302	467	-	.	gene_id 1 ; sequence SPP00000868_2.0 ; gene_orientation +
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	cds	53284	53302	.	-	.	
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	exon	53284	53302	.	-	.	insertions 0 ; deletions 0
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	splice5	53282	53283	.	-	.	intron_id 1 ; splice_site "GT"
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	intron	50089	53283	.	-	.	intron_id 1
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	splice3	50089	50090	.	-	.	intron_id 0 ; splice_site "AG"
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	cds	49998	50088	.	-	.	
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	exon	49998	50088	.	-	.	insertions 0 ; deletions 0
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	splice5	49996	49997	.	-	.	intron_id 2 ; splice_site "GT"
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	intron	48536	49997	.	-	.	intron_id 2
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	splice3	48536	48537	.	-	.	intron_id 1 ; splice_site "AG"
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	cds	48452	48535	.	-	.	
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	exon	48452	48535	.	-	.	insertions 0 ; deletions 0
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	splice5	48450	48451	.	-	.	intron_id 3 ; splice_site "GT"
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	intron	47859	48451	.	-	.	intron_id 3
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	splice3	47859	47860	.	-	.	intron_id 2 ; splice_site "AG"
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	cds	47771	47858	.	-	.	
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	exon	47771	47858	.	-	.	insertions 0 ; deletions 0
gi|398925264|gb|JH767725.1|:subseq(51416090,100104)	exonerate:protein2genome:local	similarity	47771	53302	467	-	.	alignment_id 1 ; Query SPP00000868_2.0 ; Align 53303 1 18 ; Align 50087 8 87 ; Align 48535 38 81 ; Align 47858 66 87
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
