Command line: [exonerate -m p2g --showtargetgff -q 1B.query.dir/E.GPx8.1.fa.x.fa -t 3B.fastasub.dir/1.E.GPx8.1.fa.x.fa]
Hostname: [ws116063]

C4 Alignment:
------------
         Query: SPP00000857_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Horse (Equus caballus)
        Target: gi|398924304|gb|JH767731.1|:subseq(29221653,103787) Ceratotherium simum simum unplaced genomic scaffold scaffold00009, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 552
   Query range: 2 -> 133
  Target range: 49999 -> 53787

     3 : AlaLeuPhePhePhePheArgGluValAlaLeuValValAsnValAlaSerAspCysGln :    22
         !.!!!!||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ValPhePhePhePhePheArgGluValAlaLeuValValAsnValAlaSerAspCysGln
 50000 : GTTTTTTTTTTCTTTTTCCGGGAGGTTGCACTAGTTGTAAACGTGGCTAGTGACTGCCAA : 50057

    23 : LeuThrAspArgAsnTyrLeuGlyLeuGlnGluLeuHisLysGluPheGlyProPheHis :    42
         |||||||||||||||||||||!.!||||||||||||||||||||||||||||||||||||
         LeuThrAspArgAsnTyrLeuAlaLeuGlnGluLeuHisLysGluPheGlyProPheHis
 50058 : CTCACAGACAGAAATTACTTAGCACTGCAGGAACTGCACAAAGAGTTTGGACCATTCCAC : 50117

    43 : PheSerValLeuAlaPheProCysAsnGlnPheGlyGluSerGluProArgProSerAsn :    62
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         PheSerValLeuAlaPheProCysAsnGlnPheGlyGluSerGluProArgProSerAsn
 50118 : TTCAGCGTCTTGGCTTTTCCATGCAATCAGTTTGGAGAATCGGAGCCCCGCCCAAGCAAC : 50177

    63 : GluValValSerPheAlaArgAsnAsnTyrGlyAlaThrPheProIlePheHisLysIle :    82
         |||||||||||||||||||||||||||||||||!.!||||||||||||||||||||||||
         GluValValSerPheAlaArgAsnAsnTyrGlyValThrPheProIlePheHisLysIle
 50178 : GAAGTAGTATCTTTTGCAAGAAATAACTACGGAGTAACATTCCCCATCTTCCACAAGATT : 50237

    83 : LysIleLeuGlySerGluAlaAspProAlaPheArgPheLeuArgTrpAsnPheTrpLys :   102
         |||||||||||||||! !|||!!:||||||||||||||||||  ! ! !!.!:!      
         LysIleLeuGlySerGlyAlaGluProAlaPheArgPheLeuValGlyLysTyrLeuPro
 50238 : AAGATTCTAGGATCTGGAGCAGAGCCTGCATTTAGATTTCTTGTTGGTAAATATCTACCT : 50297

   103 : TyrLeuValAsnProGlu  >>>> Target Intron 1 >>>>  GlyGlnValValL :   113
         ! !|||..!||| !!  !           3395 bp           |||||||||||||
         CysLeuThrAsnThrMet-+                         ++GlyGlnValValL
 50298 : TGCCTCACCAATACAATGtt.........................agGGTCAAGTTGTGA : 53725

   114 : ysPheTrpArgProGluGluProIleAspValIleArgProGluIleAlaAlaLeuIleA :   133
         ||||||||||||||||||||||||||||||||||||||||||||||||||! !|||||||
         ysPheTrpArgProGluGluProIleAspValIleArgProGluIleAlaAspLeuIleA
 53726 : AGTTCTGGAGGCCAGAGGAGCCCATTGACGTCATCAGGCCTGAGATAGCAGATCTGATTA : 53785

   134 : rg :   133
         ||
         rg
 53786 : GA : 53787

vulgar: SPP00000857_2.0 2 133 . gi|398924304|gb|JH767731.1|:subseq(29221653,103787) 49999 53787 + 552 M 106 318 5 0 2 I 0 3391 3 0 2 M 25 75
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|398924304|gb|JH767731.1|:subseq(29221653,103787)	exonerate:protein2genome:local	gene	50000	53787	552	+	.	gene_id 1 ; sequence SPP00000857_2.0 ; gene_orientation +
gi|398924304|gb|JH767731.1|:subseq(29221653,103787)	exonerate:protein2genome:local	cds	50000	50317	.	+	.	
gi|398924304|gb|JH767731.1|:subseq(29221653,103787)	exonerate:protein2genome:local	exon	50000	50317	.	+	.	insertions 0 ; deletions 0
gi|398924304|gb|JH767731.1|:subseq(29221653,103787)	exonerate:protein2genome:local	splice5	50318	50319	.	+	.	intron_id 1 ; splice_site "TT"
gi|398924304|gb|JH767731.1|:subseq(29221653,103787)	exonerate:protein2genome:local	intron	50318	53712	.	+	.	intron_id 1
gi|398924304|gb|JH767731.1|:subseq(29221653,103787)	exonerate:protein2genome:local	splice3	53711	53712	.	+	.	intron_id 0 ; splice_site "AG"
gi|398924304|gb|JH767731.1|:subseq(29221653,103787)	exonerate:protein2genome:local	cds	53713	53787	.	+	.	
gi|398924304|gb|JH767731.1|:subseq(29221653,103787)	exonerate:protein2genome:local	exon	53713	53787	.	+	.	insertions 0 ; deletions 0
gi|398924304|gb|JH767731.1|:subseq(29221653,103787)	exonerate:protein2genome:local	similarity	50000	53787	552	+	.	alignment_id 1 ; Query SPP00000857_2.0 ; Align 50000 3 318 ; Align 53713 109 75
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
